View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15388_low_8 (Length: 248)
Name: NF15388_low_8
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15388_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 33303099 - 33303328
Alignment:
| Q |
18 |
ttaacgagttattctttcttgtcaaataggcaactccaggaataaccgaagaatttccgacaaagcatgatattatgggattcatatggatttgaattat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33303099 |
ttaacgagttattctttcttgtcaaataggcaactccaggaataaccgaagaatttccgacagagcatgatattatgggattcatatggatttgaattat |
33303198 |
T |
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| Q |
118 |
tcaacnnnnnnnnnnnncaggatcagttcataatgacagtattgacgacacggttataaatcaaacacctcagtagccaccataatgacagtattgcata |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33303199 |
tcaacttttttatttttcaggatcagttcataatgacagtattgacgacacagttataaatcaaacacctcagtagccaccataatgacagtattgcata |
33303298 |
T |
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| Q |
218 |
taggaattgtataaatacacaaatcacatt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33303299 |
taggaattgtataaatacacaaatcacatt |
33303328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 33418673 - 33418773
Alignment:
| Q |
18 |
ttaacgagttattctttcttgtcaaataggcaactccaggaataaccgaagaatttccgacaaagcatgatattatgggattcat-atggatttgaatta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
33418673 |
ttaacgagttattctttcttgtcaaataggcaactccaggaataaccgaagaatttccgacagagcatgatattatgggattcatgttggatttgaatta |
33418772 |
T |
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| Q |
117 |
t |
117 |
Q |
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| T |
33418773 |
t |
33418773 |
T |
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