View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15389_high_4 (Length: 413)
Name: NF15389_high_4
Description: NF15389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15389_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 305
Target Start/End: Complemental strand, 31661503 - 31661219
Alignment:
| Q |
21 |
tctcaatcaatagtagtactttgttttcatatatgaaaagtcaattgtaaatacatcaatctatacgcaaaggttaatttagtaaaaataatatataaga |
120 |
Q |
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| T |
31661503 |
tctcaatcaatagtagtactttgtttttaaatatgaaaagtcaattgtaaatacatctatctatacgcaaaggttaatttagtaaaaataatatataaga |
31661404 |
T |
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| Q |
121 |
tgcaaacactaattacactaccaattttgtttaacatatgtgaaaaatgtcaaaggatatttataaaaagggacggatagagtacatctcggctaactca |
220 |
Q |
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| T |
31661403 |
tgcaaacactgattacactaccaattttgtttaacatatgtgaaaaatgtcaaaggatatttataaaaaaggacggagagagtacatctcggttaactga |
31661304 |
T |
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| Q |
221 |
gatgattaacctatgatattacatatgaagaaggaaggtacgctagttttgtttttaaaaagtattcctttcatcctaaacaact |
305 |
Q |
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| T |
31661303 |
gatgattaacctatgatattacatatgaagaaggaaggtacactagttttgtttttaaaaagtactcctttcgtcctaaacaact |
31661219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 58 - 281
Target Start/End: Complemental strand, 31672770 - 31672548
Alignment:
| Q |
58 |
aagtcaattgtaaatacatcaatctatacgcaaaggttaatttagtaaaaataatatataagatgcaaacactaattacactaccaattttgtttaacat |
157 |
Q |
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| T |
31672770 |
aagtcaattgtaaatacatatatctatacacaaaagt-aatttagtaaaagtattacataaaatatacacattcattacaccaccaactttttttaacat |
31672672 |
T |
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| Q |
158 |
atgtgaaaaatgtcaaaggatatttataaaaagggacggatagagtacatctcggctaactcagatgattaacctatgatattacatatgaagaaggaag |
257 |
Q |
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| T |
31672671 |
atgtgaaaaatataaaaggatgtttataaaaaatgacggaggaagtacatcttaactaactcaaatgattaacatatgatgttgcgtataaagaaggaag |
31672572 |
T |
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| Q |
258 |
gtacgctagttttgtttttaaaaa |
281 |
Q |
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| T |
31672571 |
gtatgctagttttatttttaaaaa |
31672548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 31659615 - 31659583
Alignment:
| Q |
381 |
aacatataagaagttgtgtaatttttcttgaaa |
413 |
Q |
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| T |
31659615 |
aacatataagaagttgtgtaatttttcttgaaa |
31659583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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