View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15389_low_3 (Length: 486)
Name: NF15389_low_3
Description: NF15389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15389_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Original strand, 51805859 - 51806321
Alignment:
| Q |
10 |
acagacatgggaaaatcgccggtgaaggagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgca |
109 |
Q |
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| T |
51805859 |
acagacatgggaaaatcgccggtgaaggagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgca |
51805958 |
T |
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| Q |
110 |
tcttgttcatgttgagttgttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttgg |
209 |
Q |
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| T |
51805959 |
tcttgttcatgttgagtagttctaagtgagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttgg |
51806058 |
T |
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| Q |
210 |
aaggtaagagcaaatatttgatgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacaggtgattccg |
309 |
Q |
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| T |
51806059 |
aaggtaagagcaaatatttgacgggaagtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtctcctttgttgtcacaggtgattccg |
51806158 |
T |
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| Q |
310 |
gtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttcctgagagagactctttcattagagnnnnnnnctcagattggt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51806159 |
gtgaagtcgcagattggtttatccactttgcttacaccccaatcaaaagggtagtttcctgagagagactctttcattagagaaaaaaactcagattggt |
51806258 |
T |
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| Q |
410 |
ttgtgctgataacatgtgacatgttggtcatggaaataataactattagtccaaagaagaaga |
472 |
Q |
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| T |
51806259 |
ttgtgctgataacatgtgacatgttggtcatggaaataataactattagtccaaagaagaaga |
51806321 |
T |
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