View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15389_low_4 (Length: 458)
Name: NF15389_low_4
Description: NF15389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15389_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 6565254 - 6565675
Alignment:
| Q |
16 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565254 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
6565353 |
T |
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| Q |
116 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565354 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
6565453 |
T |
|
| Q |
216 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565454 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcact |
6565553 |
T |
|
| Q |
316 |
atatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565554 |
atatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaa |
6565653 |
T |
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| Q |
416 |
ctgtgtattgtgtattttagac |
437 |
Q |
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| T |
6565654 |
ctgtgtattgtgtattttagac |
6565675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
156 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
255 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
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| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
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| Q |
256 |
ctccttatct |
265 |
Q |
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|||||||||| |
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| T |
34261399 |
ctccttatct |
34261390 |
T |
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