View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1538_high_1 (Length: 732)
Name: NF1538_high_1
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 285 - 724
Target Start/End: Original strand, 13024290 - 13024727
Alignment:
| Q |
285 |
tgcaaatgcaaaccttatttaaaaagtggtaaggtatgaaaatagtttataattaaagagtgacgtcttttactatacaaacagattatgtaaaaaccaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13024290 |
tgcaaatgcaaaccttatttaaaaagtggtaaggtatgaaaatagtttataattaaagagtgacgtcttttactatacaaacagattatgtaaaaaccaa |
13024389 |
T |
|
| Q |
385 |
caataatcaagatacacaacattatttttaaatgcattaatttgtaggtctctaaatcattcaggaatttttaaataggtctttgaactnnnnnnnntga |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
13024390 |
caataatcaagatacacaacattatttttaaatgcattaatttgtaggtctctaaatcattcaggaatttttaaataggtctttgaactaaaaaaaatta |
13024489 |
T |
|
| Q |
485 |
agttataatactcattattcaagtccttaaactataactcttgtaaataaaaaa-ccttaaacaannnnnnnnnnncttttcaatttagtcattttgtta |
583 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
13024490 |
agttataatattcattattcaagtccttaaactataactcttgtaaaaaaaaaatccttaaacaattttatttt---ttttcaatttagtcatttcgtta |
13024586 |
T |
|
| Q |
584 |
aacaaaccattaaccgtcttcaaaatatatataattactatttatggatttcttgacatgcaccggcacaagttagtatcatcctacaattatcaaccaa |
683 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| | |
|
|
| T |
13024587 |
aacaaaccattaaccgtcttcaaaatatatataattactatttatggatttcttgacatacaccggcacaagttagcatgatcctacaattatcaaccca |
13024686 |
T |
|
| Q |
684 |
cattgttagtttatttttgttagttttcttttagtattatc |
724 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
13024687 |
catttttagtttttttttgttagttttcttttagtaatatc |
13024727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 13023970 - 13024243
Alignment:
| Q |
18 |
cttcttggactgttggcagagagtgctttgtttgtgtgagattgtaagtggggacgagaaaggcaatgtataaataaaagagatgaa------------- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13023970 |
cttcttggactgttggcagagagtgctttgtttgtgtgagattgtaagtggggacgagaaaggcaatgtataaataaaagagatgaattcttgaacaata |
13024069 |
T |
|
| Q |
105 |
---------ttcttgaacaatattggaaaacactcaattttcatattgacagaggattgaaaaatgagtgtactattatataatgagtgatttataaaga |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13024070 |
ttggaagaattcttgaacaatattggaaaacactcaattttcatattgatagaggattgaaaaatgagtgtactattatataatgagtgatttataaaga |
13024169 |
T |
|
| Q |
196 |
attatattcatcaaattgaaataattttgtaaggttgagttactcgaatttactatgtaacataacaagaggtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13024170 |
attatattcatcaaattgaaataattttgtaaggttgagttactcgaatttactatgtaacataacaagaggtg |
13024243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 22297109 - 22297152
Alignment:
| Q |
52 |
tgtgagattgtaagtggggacgagaaaggcaatgtataaataaa |
95 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
22297109 |
tgtgagattggaagtggggacgagaaaggcaatatataaataaa |
22297152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 22297234 - 22297272
Alignment:
| Q |
104 |
attcttgaacaatattggaaaacactcaattttcatatt |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22297234 |
attctttaacaatattggaaaacactcaattttcatatt |
22297272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University