View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_10 (Length: 355)
Name: NF1538_high_10
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 54 - 338
Target Start/End: Complemental strand, 42517079 - 42516787
Alignment:
| Q |
54 |
acaacacacaatgatatgtaatgttgaccacccaaaacttgaagagcaaatttatgaaaatgaccaacttgaagtgagctaagaatgacaacatatatag |
153 |
Q |
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| T |
42517079 |
acaacacacaatgatatgtaatgttgaccacccaaaacttgaagagcaaatttatgaaaatgaccaacttgaagtgagctaagaatgacaac----atag |
42516984 |
T |
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| Q |
154 |
tggaagcaaacacatgagtacctagctagtctcacatttctcaaaaacaatgtaatagtcgtcaatgacaagggatttacttttttcatgaaagaataga |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42516983 |
tggaagcaaacacatgagtacctagctagtctcacatttctcaaaaacaatgtaata---gtcaatgacaagggatttacttttttcatgaaagaataga |
42516887 |
T |
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| Q |
254 |
ttggtagct----------------cgaaacatctaacaatgcaaaagaaatgaatcaaaaagaaaatagagttgaacaagaaaatcagaacggttctaa |
337 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42516886 |
-tggtagctataatgagagcacttacgaaacatctaacaatgcaaaagaaatgaatcaagaagaaaatagagttgaacaagaaaatcagaacggttctaa |
42516788 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22730813 - 22730857
Alignment:
| Q |
14 |
atatatatattactactactatgatttagattacaacattacaac |
58 |
Q |
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||||||||||||||| || |||||||||| |||||| |||||||| |
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| T |
22730813 |
atatatatattactaatattatgatttagtttacaaaattacaac |
22730857 |
T |
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