View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1538_high_13 (Length: 312)

Name: NF1538_high_13
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1538_high_13
NF1538_high_13
[»] chr4 (25 HSPs)
chr4 (22-296)||(36643931-36644205)
chr4 (76-172)||(11055226-11055323)
chr4 (76-172)||(46944544-46944641)
chr4 (85-165)||(51995128-51995209)
chr4 (85-172)||(12673037-12673125)
chr4 (76-171)||(51407949-51408045)
chr4 (76-171)||(55891985-55892081)
chr4 (76-172)||(52813644-52813741)
chr4 (76-161)||(28265673-28265759)
chr4 (75-172)||(40797873-40797971)
chr4 (76-172)||(22184546-22184643)
chr4 (76-172)||(49405635-49405732)
chr4 (76-170)||(9959377-9959471)
chr4 (75-172)||(24007902-24008000)
chr4 (76-172)||(38791735-38791831)
chr4 (77-172)||(19455159-19455255)
chr4 (76-166)||(13455750-13455841)
chr4 (76-172)||(48802475-48802573)
chr4 (76-172)||(26632979-26633076)
chr4 (76-132)||(50710784-50710841)
chr4 (73-113)||(25134665-25134705)
chr4 (90-164)||(34980518-34980593)
chr4 (80-165)||(9874212-9874298)
chr4 (126-170)||(52733752-52733796)
chr4 (76-116)||(56224245-56224285)
[»] chr1 (28 HSPs)
chr1 (76-172)||(45581008-45581105)
chr1 (75-164)||(24575960-24576050)
chr1 (76-172)||(28006393-28006490)
chr1 (74-178)||(50447378-50447483)
chr1 (81-172)||(31816611-31816703)
chr1 (76-164)||(7841674-7841762)
chr1 (76-172)||(15257171-15257268)
chr1 (76-172)||(15306536-15306633)
chr1 (76-172)||(29677519-29677616)
chr1 (76-165)||(12224575-12224665)
chr1 (75-172)||(47983298-47983396)
chr1 (76-164)||(6413290-6413379)
chr1 (76-178)||(44596554-44596657)
chr1 (75-172)||(7996014-7996112)
chr1 (76-172)||(7016075-7016172)
chr1 (76-172)||(38061178-38061275)
chr1 (93-172)||(5204486-5204566)
chr1 (76-170)||(14101908-14102003)
chr1 (76-172)||(7956367-7956464)
chr1 (76-172)||(39802767-39802864)
chr1 (76-165)||(21680656-21680746)
chr1 (76-164)||(36119122-36119211)
chr1 (77-165)||(45653433-45653521)
chr1 (129-170)||(51432257-51432298)
chr1 (93-172)||(23915614-23915694)
chr1 (122-178)||(28020629-28020685)
chr1 (85-172)||(40159639-40159727)
chr1 (90-161)||(48575094-48575166)
[»] chr7 (21 HSPs)
chr7 (76-172)||(18740218-18740315)
chr7 (76-172)||(21760583-21760680)
chr7 (76-172)||(46573612-46573709)
chr7 (77-172)||(18249994-18250090)
chr7 (76-172)||(17025361-17025458)
chr7 (76-172)||(33898944-33899041)
chr7 (76-172)||(35543556-35543653)
chr7 (76-165)||(32357016-32357106)
chr7 (76-172)||(26719863-26719960)
chr7 (76-172)||(33124743-33124840)
chr7 (76-172)||(33935556-33935653)
chr7 (76-172)||(44421901-44421998)
chr7 (77-170)||(41449790-41449884)
chr7 (74-165)||(36472494-36472586)
chr7 (76-178)||(222226-222329)
chr7 (74-172)||(33019349-33019448)
chr7 (130-172)||(48634495-48634537)
chr7 (76-152)||(6866681-6866758)
chr7 (80-172)||(31491863-31491956)
chr7 (88-165)||(29037792-29037870)
chr7 (136-177)||(10096514-10096555)
[»] chr3 (12 HSPs)
chr3 (76-172)||(12710745-12710842)
chr3 (76-172)||(9505121-9505218)
chr3 (76-172)||(40943604-40943701)
chr3 (76-172)||(30662131-30662228)
chr3 (76-172)||(52934855-52934952)
chr3 (76-172)||(52199472-52199569)
chr3 (77-172)||(26049541-26049637)
chr3 (76-171)||(20550202-20550298)
chr3 (74-153)||(54432175-54432255)
chr3 (84-170)||(18074621-18074708)
chr3 (139-172)||(1674672-1674705)
chr3 (95-162)||(48730856-48730924)
[»] scaffold0171 (1 HSPs)
scaffold0171 (75-161)||(21141-21228)
[»] chr8 (6 HSPs)
chr8 (76-178)||(39478087-39478190)
chr8 (85-172)||(43384837-43384925)
chr8 (76-165)||(3307984-3308074)
chr8 (76-172)||(12378395-12378492)
chr8 (90-178)||(32740676-32740765)
chr8 (94-171)||(1091771-1091849)
[»] scaffold0223 (1 HSPs)
scaffold0223 (76-172)||(14469-14566)
[»] chr6 (9 HSPs)
chr6 (76-164)||(1501899-1501988)
chr6 (76-172)||(17441201-17441298)
chr6 (76-172)||(3081718-3081815)
chr6 (76-172)||(13312065-13312164)
chr6 (76-172)||(4441301-4441398)
chr6 (76-172)||(7437347-7437444)
chr6 (82-166)||(18099865-18099950)
chr6 (126-170)||(9463405-9463449)
chr6 (76-163)||(11460014-11460102)
[»] chr5 (16 HSPs)
chr5 (76-172)||(27196120-27196217)
chr5 (76-172)||(32945021-32945118)
chr5 (76-172)||(1840687-1840784)
chr5 (76-171)||(5382825-5382921)
chr5 (81-172)||(19282119-19282211)
chr5 (74-172)||(27450579-27450678)
chr5 (76-170)||(31021908-31022003)
chr5 (79-172)||(39414225-39414319)
chr5 (76-164)||(10327981-10328070)
chr5 (76-172)||(39407449-39407546)
chr5 (76-172)||(19716226-19716318)
chr5 (76-166)||(26298360-26298451)
chr5 (90-166)||(26299896-26299973)
chr5 (76-152)||(28247473-28247550)
chr5 (76-172)||(34724754-34724851)
chr5 (76-172)||(36523798-36523895)
[»] chr2 (6 HSPs)
chr2 (75-172)||(27464571-27464669)
chr2 (76-164)||(3409188-3409277)
chr2 (79-172)||(44740486-44740580)
chr2 (80-172)||(24844670-24844763)
chr2 (76-165)||(29806956-29807046)
chr2 (76-166)||(28968869-28968960)
[»] scaffold0025 (1 HSPs)
scaffold0025 (75-172)||(11433-11531)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 36643931 - 36644205
Alignment:
Q  22 caatacttcaagccaaagcaaattgttccaaaagcaagtgttatagtacgacaatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36643931 caatacttcaagccaaagcaaattgttccaaaagcaagtgttatagtacgacaatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc 36644030  T
Q  122 atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcgaactatactgtctatacataaccccactcatttggttcaggagcaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36644031 atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcgaactatactgtctatacataaccccactcatttggttcaggagcaag 36644130  T
Q  222 ctcgacacacactacaccatcacaagtctgttaacacacaatacttctctaacattcataatttcaattaaatgg 296  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36644131 ctcgacacacactacactatcacaagtctgttaacacacattacttctctaacattcataatttcaattaaatgg 36644205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 11055226 - 11055323
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| | |||||||||  |||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  11055226 tagggctgacaatgaaccgaaccaactcgacaatagttcggaactcgattcgataattaactcattgaacttggttcatgaaccaaatgagctgaact 11055323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 46944544 - 46944641
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| |||||||||||||| || ||| |||||||  ||| |||||||| ||||||||||||||||||| |||||    
T  46944544 tagggctgacaatgaaccgaaccaactcaaaaatagttcgagattcgattcgataattggctcgttgaacttggttcatgaaccaaatgagtcgaact 46944641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 51995209 - 51995128
Alignment:
Q  85 caatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    |||| |||||||||||||| ||||||||||||||||| ||| ||||||||| || |||||||| ||||||||||||||||||    
T  51995209 caatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattaattcgttgaacttggttcatgaaccaaatgag 51995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 12673037 - 12673125
Alignment:
Q  85 caatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| |||||||||||||| |||||||||||||| || ||| ||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  12673037 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaact 12673125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 51407949 - 51408045
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaac 171  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||| ||| | ||||||| || || ||||| ||||||||||||||||||| ||||    
T  51407949 tagggctgacaatgaactgaaccaactcgaaaatagttcgagactcgattcggtaattaattcgttcaacttggttcatgaaccaaatgagtcgaac 51408045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 55891985 - 55892081
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaac 171  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||| ||| | ||||||| || |||||||| |||||||||||||| |||| ||||    
T  55891985 tagggctgacaatgaactgaaccaactcaaaaatagttcgagactcgattcggtaattaattcgttgaacttggttcatgaaccaaacgagtcgaac 55892081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 52813741 - 52813644
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| ||||||| |||||||||||||| | ||||||| | ||||| |||||| ||||||||| |||||||| |||||||||||||| ||| ||||||    
T  52813741 tagggttgacaatgaaccgaaccaactcgacaatagtttgggactctatttgacaattaactcgttgaacttggttcatgaaccaaacgagctgaact 52813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 28265673 - 28265759
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaa 161  Q
    |||||||| |||| ||| |||||||||| ||||||||||||||||| ||| | ||||||| || |||||||| ||||||||||||||    
T  28265673 tagggctggcaatgaactgaaccaactcgaaaatagttcgagactcgattcggtaattaattcgttgaacttggttcatgaaccaaa 28265759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 40797971 - 40797873
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| ||| |||| |||||||||||||| |||||||||||| |||  ||| |||||||   ||||||||||| ||||||||||||||||||| |||||    
T  40797971 ataggactggcaatgaaccgaaccaactcaaaaatagttcgatacttgattcgataattggttcattgaacttggttcatgaaccaaatgagtcgaact 40797873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 22184643 - 22184546
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| | ||||||| | ||||| ||| || ||||||||| |||||||| |||||||||||||| ||| ||||||    
T  22184643 tagggctggcaatgaaccgaaccaactcgacaatagtttgggactcgattcgacaattaactcgttgaacttggttcatgaaccaaacgagctgaact 22184546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 49405635 - 49405732
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||| | |||||||||||| |||| ||| | ||||| | || |||||||| ||| ||||||||||||||| |||||    
T  49405635 tagggctgacaatgaaccgaaccaacccgaaaatagttcgaaactcgattcggtaattgattcgttgaacttggtttatgaaccaaatgagtcgaact 49405732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 9959471 - 9959377
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    ||||||||||||| |||||||||||||| | |||||||||| |||| |||  |||| |||||| |||||| ||||||||||| |||||||| ||||    
T  9959471 tagggctgacaatgaaccgaaccaactcgacaatagttcgaaactcgattctataaataactcgttgaac-ttgttcatgaatcaaatgagctgaa 9959377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 24007902 - 24008000
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||||||||| ||  |||||||||| |||||||||||||| || ||||||| ||| | || |||||||| ||||||||||| || ||||| ||||    
T  24007902 atagggctgacaatgaattgaaccaactcgaaaatagttcgagattcgatttgatgattgattcgttgaacttggttcatgaacctaacgagttaaact 24008000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 38791831 - 38791735
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| | ||||||| | || ||| || || ||||||||| |||||||| |||||||||||||||||| ||||||    
T  38791831 tagggctggcaatgaaccgaaccaactcgacaatagtttg-gaatcaattcgacaattaactcgttgaacttggttcatgaaccaaatgagctgaact 38791735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19455159 - 19455255
Alignment:
Q  77 agggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||||||| |||||| |  | || |||||||||||| |||| |||||| |||||| || |||||||| ||||||||| |||||||| ||||||    
T  19455159 agggctgacaatgaaccgagcttattcgaaaatagttcgaaactcgatttgacaattaattcgttgaacttggttcatgaatcaaatgagctgaact 19455255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 13455841 - 13455750
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagt 166  Q
    ||||||||||||| |||||||||||||  |||||| || |||| || ||| ||||||||| || ||||||||  || |||||||||||||||    
T  13455841 tagggctgacaataaaccgaaccaacttgaaaataatttgagattcgattcgataattaattcgttgaacttgatttatgaaccaaatgagt 13455750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 48802475 - 48802573
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataatt-aactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||| ||||| | ||| |  |  ||||||||  |||||||||||||||||| |||||    
T  48802475 tagggctgacaatgaaccgaaccaactcgaaaatagttcgaaactcgatttggttattgatttttttgaacttgattcatgaaccaaatgagtcgaact 48802573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 26633076 - 26632979
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| | |||| |||||||||||||| | |||||||||  |||| ||| || ||||||||| |||||||| | |||| ||||||||||| ||||||    
T  26633076 tagggccggcaatgaaccgaaccaactcgataatagttcgtaactcgattcgacaattaactcgttgaacttggctcattaaccaaatgagctgaact 26632979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 50710784 - 50710841
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataatt 132  Q
    ||||||||||||| ||||||| |||||| |||||||||||| |||| |||||||||||    
T  50710784 tagggctgacaatgaaccgaatcaactcgaaaatagttcgatactcgatttgataatt 50710841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 25134705 - 25134665
Alignment:
Q  73 caatagggctgacaatcaaccgaaccaactccaaaatagtt 113  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  25134705 caatagggctgacaatgaaccgaaccaactcgaaaatagtt 25134665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 34980518 - 34980593
Alignment:
Q  90 aaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    |||| ||||||||| ||||||||| ||||||| ||| ||||||| | |||||||||||  |||||||| |||||||    
T  34980518 aaccaaaccaactcgaaaatagtttgagactcgattcgataattgattcattgaacttgattcatgaatcaaatga 34980593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 9874212 - 9874298
Alignment:
Q  80 gctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||||||| |||||||||||||| |||||||||| ||| || |||   ||||||| || ||||| || || |||||||||||||||    
T  9874212 gctgacaatgaaccgaaccaactcaaaaatagttcaagattcgattcagtaattaattcgttgaaattggtacatgaaccaaatgag 9874298  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 52733752 - 52733796
Alignment:
Q  126 gataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    |||||||||||| ||||| ||  ||||||||||||||||||||||    
T  52733752 gataattaactcgttgaatttaattcatgaaccaaatgagttgaa 52733796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 56224285 - 56224245
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcga 116  Q
    ||||||||||||| |||||||||||||| || |||||||||    
T  56224285 tagggctgacaatgaaccgaaccaactcaaacatagttcga 56224245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 45581008 - 45581105
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||  |||||||||||| |||| ||| |||||||| ||| |||||||| |||||||||||||||||||||||||    
T  45581008 tagggctgacaatgaaccgaaccaacttgaaaatagttcgaaactcgattcgataattatctcgttgaacttggttcatgaaccaaatgagttgaact 45581105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 24576050 - 24575960
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgaga-ctcatttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    |||||||||||||| |||||||||||||| ||||||||||||||  | ||| ||||||| |||| |||||||| |||||||||||||||||    
T  24576050 atagggctgacaatgaaccgaaccaactcgaaaatagttcgagatttgattcgataattgactcgttgaacttggttcatgaaccaaatga 24575960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 28006490 - 28006393
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| | |||| |||||||||||||| |||||||||||||| || ||| ||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  28006490 tagggccggcaatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaact 28006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 50447483 - 50447378
Alignment:
Q  74 aatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||| ||| ||||||||| || || ||||| ||| ||||||||||||||  |||||    
T  50447483 aatagggctgacaatgaaccaaaccaactcgaaaatagttcgagactcgattcgataattaattcgttaaacttggtttatgaaccaaatgagccgaact 50447384  T
Q  173 cgaact 178  Q
     |||||    
T  50447383 tgaact 50447378  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 31816703 - 31816611
Alignment:
Q  81 ctgacaatcaaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||||||||||||| |||||||||||| ||||| || | ||||| | || |||||||| |||||||||||||||||||||||||    
T  31816703 ctgacaatgaaccgaaccaactcgaaaatagttcgaaactcaattcggtaattgattcgttgaacttggttcatgaaccaaatgagttgaact 31816611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 7841762 - 7841674
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    |||||||| |||| |||||||||||||| |||||| |||||||||| ||| ||||||||| || |||||||| |||||||||||||||||    
T  7841762 tagggctgtcaatgaaccgaaccaactcgaaaata-ttcgagactcgattcgataattaattcgttgaacttggttcatgaaccaaatga 7841674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 15257171 - 15257268
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| ||||||||| || |||| ||| |||||||   |||||| |||| ||||||||||||||||||| |||||    
T  15257171 tagggctgacaatgaaccgaaccaactcaaaaatagtttgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaact 15257268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 15306633 - 15306536
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||  | |||||||||  |||| ||| ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  15306633 tagggctggcaatgaaccgaaccaacttgacaatagttcggaactcgattcgataattaattcattgaacttggttcatgaaccaaatgagctgaact 15306536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 29677519 - 29677616
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||||||| |||| |||||||||||   || |||||||| ||||| ||||||||||||| |||||    
T  29677519 tagggctggcaatgaaccgaaccaactcgaaaatagttcgatactcgatttgataattggttcgttgaacttggttcacgaaccaaatgagtcgaact 29677616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 12224575 - 12224665
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||||||||||| |||||||||||||| | |||||||||  | || ||| || ||||||||| |||||||| ||||||||||||||||||    
T  12224575 tagggctgacaatgaaccgaaccaactcgacaatagttcggaattcgattcgacaattaactcgttgaacttggttcatgaaccaaatgag 12224665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 47983396 - 47983298
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| ||||||| |||||||||||||| |||||||||||||| || ||| ||||||| | |  |||||||| ||||| ||||||||||||| |||||    
T  47983396 atagggttgacaatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgatttgttgaacttggttcacgaaccaaatgagtcgaact 47983298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 6413379 - 6413290
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    |||||||| |||| || ||||||||||| |||||||||||||| || ||||||||||| | || |||||| | |||||||||||||||||    
T  6413379 tagggctggcaatgaatcgaaccaactcgaaaatagttcgagattcgatttgataattgattcgttgaacctggttcatgaaccaaatga 6413290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 44596657 - 44596554
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcg 174  Q
    |||||||| |||| |||||||||||||| | ||||||| |  |||| ||| || ||||||||| ||||| || |||||||||||||||||| |||||| |    
T  44596657 tagggctggcaatgaaccgaaccaactcgacaatagtttggaactcgattcgacaattaactcgttgaatttggttcatgaaccaaatgagctgaacttg 44596558  T
Q  175 aact 178  Q
    ||||    
T  44596557 aact 44596554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 7996112 - 7996014
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| ||||||| |||||||||||||  |||||||||||||| || ||| ||||||| | || |||||||| |||||| |||| ||||||| |||||    
T  7996112 atagggttgacaatgaaccgaaccaacttgaaaatagttcgagattcgattcgataattgattcgttgaacttggttcataaacctaatgagtcgaact 7996014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 7016075 - 7016172
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| || | | |||||||||| ||| || |||| | |  |||||||| |||||||||||||||||| ||||||    
T  7016075 tagggctgacaatgaaccgaaccaactcgaacaaaattcgagactcgattcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaact 7016172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 38061178 - 38061275
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||| ||||| || ||||||||||| | || ||||||||  || ||||||| ||||||| |||||    
T  38061178 tagggctggcaatgaaccgaaccaactcgaaaatagtgcgagattcgatttgataattgattcgttgaacttgatttatgaacctaatgagtcgaact 38061275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 5204486 - 5204566
Alignment:
Q  93 cgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||| ||||||||| |||| || ||| ||||||| |||| |||||||| |||| |||||||||||||| |||||    
T  5204486 cgaaccaactcgaaaatagtttgagattcgattcgataattgactcgttgaacttggttcgtgaaccaaatgagtcgaact 5204566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 14102003 - 14101908
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    |||||| |||||| | |||||||||||  | |||||||| | |||| ||| || ||||| |||||||||||| |||||||||||||||||| ||||    
T  14102003 tagggccgacaatgatccgaaccaacttgataatagttccaaactcgattcgacaattatctcattgaacttagttcatgaaccaaatgagctgaa 14101908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 7956464 - 7956367
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| || |||| |||||||||||||| |||||||||||| |||| ||| |||||||   |||||| |||| |||||||||| |||| ||| |||||    
T  7956464 tagggttggcaatgaaccgaaccaactcgaaaatagttcgatactcaattcgataattggttcattggacttggttcatgaacaaaattagtcgaact 7956367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 39802767 - 39802864
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| || ||||||||||| |||||||||||||||||  || |  | |||| || |||||| | ||||||||||||||||||| |||||    
T  39802767 tagggctggcaatgaatcgaaccaactcgaaaatagttcgagactcggttcggcagttaattcgttgaacatggttcatgaaccaaatgagtcgaact 39802864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 21680656 - 21680746
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||| || |||| |||||||||| ||| |||||||||||| |||| ||| |||||||| ||| |||||||| ||| |||||  |||||||    
T  21680656 tagggttggcaatgaaccgaaccagctcgaaaatagttcgaaactcgattcgataattatctcgttgaacttggtttatgaatgaaatgag 21680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 36119211 - 36119122
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    ||||||||||||| |||||||||||||  |||||||||||| | || ||| || ||||  ||| | |||||| ||| |||||||||||||    
T  36119211 tagggctgacaatgaaccgaaccaactaaaaaatagttcgaaattcgattcgacaattttctcgtcgaacttggtttatgaaccaaatga 36119122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 45653433 - 45653521
Alignment:
Q  77 agggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    |||||| ||||| |||||| ||||||| |||||||||| | |||| ||| || |||||  || |||||||| ||||||||||||||||||    
T  45653433 agggctaacaatgaaccga-ccaactcgaaaatagttcaaaactcgattcgacaattatttcgttgaacttggttcatgaaccaaatgag 45653521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 51432257 - 51432298
Alignment:
Q  129 aattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    ||||||||| ||| |||| |||||||||||||||||||||||    
T  51432257 aattaactcgttgtacttggttcatgaaccaaatgagttgaa 51432298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 23915614 - 23915694
Alignment:
Q  93 cgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||| | || ||||||| |||| |||  | ||||| ||| |||||||| |||||||||||||||||| ||||||    
T  23915614 cgaaccaactcgacaaaagttcgaaactcgattcaacaattatctcgttgaacttggttcatgaaccaaatgagctgaact 23915694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 28020685 - 28020629
Alignment:
Q  122 atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcgaact 178  Q
    |||| |||||||| || || ||||| ||||||||| ||||||||||||||| |||||    
T  28020685 atttaataattaattcgttaaacttagttcatgaatcaaatgagttgaacttgaact 28020629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 40159639 - 40159727
Alignment:
Q  85 caatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| |||||||||||||| ||||||||| || | || ||| |||||||   |||||| |||| ||||||||| ||||||||| |||||    
T  40159639 caatgaaccgaaccaactcgaaaatagtttgatattcgattcgataattggttcattggacttggttcatgaatcaaatgagtcgaact 40159727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 48575094 - 48575166
Alignment:
Q  90 aaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaa 161  Q
    |||||||| ||||| ||||||||  |||||||| || | ||||||| || |||||||| ||||||||||||||    
T  48575094 aaccgaactaactcgaaaatagtatgagactcaattcggtaattaattcgttgaacttggttcatgaaccaaa 48575166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 18740218 - 18740315
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| | |||| |||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  18740218 tagggccggcaatgaaccgaaccaactcgaaaatagttcgagattcgatttgataattgactcattaaacttggttcatgaaccaaatgagtcgaact 18740315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 21760583 - 21760680
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||| ||| |||||||||||||| |||||||||||| |||| ||| ||||||| | || |||||||||||||| ||||||||||||| |||||    
T  21760583 tagggctgataatgaaccgaaccaactcgaaaatagttcgaaactcgattcgataattgattcgttgaactttgttcacgaaccaaatgagtcgaact 21760680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 46573612 - 46573709
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||| ||||||| || ||| ||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  46573612 tagggctggcaatgaaccgaaccaactcaaaaataattcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaact 46573709  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 18249994 - 18250090
Alignment:
Q  77 agggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||| |||| |||||||||||||| |||||||||| |||||| ||| ||||||| | || |||||||| ||||||||||||||||||| |||||    
T  18249994 agggctggcaatgaaccgaaccaactcgaaaatagttcaagactcgattcgataattgattcgttgaacttggttcatgaaccaaatgagtcgaact 18250090  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 17025361 - 17025458
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| |||||||||| ||  || ||| ||||||| |||| |||||||| ||||| ||||||||||||| |||||    
T  17025361 tagggctgacaatgaaccgaaccaactcgaaaatagttcaaggttcgattcgataattgactcgttgaacttggttcacgaaccaaatgagtcgaact 17025458  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 33898944 - 33899041
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| |||||||||||| | || ||| || |||||  |||||| |||| ||||||||||||||||||| |||||    
T  33898944 tagggctgacaatgaaccgaaccaactcgaaaatagttcgatattcgattcgagaattagttcattggacttggttcatgaaccaaatgagtcgaact 33899041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 35543556 - 35543653
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagact-catttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| || ||||||||||| ||||||||| |||||| |||| ||||||| | || |||||||| |||||||||| |||||||| |||||    
T  35543556 tagggctgacaatgaatcgaaccaactcgaaaatagtttgagactccattcgataattgattcgttgaacttggttcatgaactaaatgagtcgaact 35543653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 32357106 - 32357016
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||||||||||| |||| ||||||||  ||||||||||||||||| ||| ||||||||| || ||||||||  ||||||||| |||||||    
T  32357106 tagggctgacaatgaaccaaaccaacttaaaaatagttcgagactcgattcgataattaattcgttgaacttgattcatgaactaaatgag 32357016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 26719960 - 26719863
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| |||||||| || ||||||||||| |||||||||||| |||| ||| |||||||   |||||| |||| ||||||||||||||||||| |||||    
T  26719960 taggactgacaatgaatcgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaact 26719863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 33124840 - 33124743
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| | ||||||| || |||| ||| || ||||||||| |||||||| ||| ||||||||||||| |||||||    
T  33124840 tagggctggcaatgaaccgaaccaactcgacaatagtttgaaactcgattcgacaattaactcgttgaacttggtttatgaaccaaatgaattgaact 33124743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 33935653 - 33935556
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| || ||||||||||| | ||||||| | ||||| ||| |||||||||||| |||||||| |||||||||||||| ||| ||||||    
T  33935653 tagggctggcaatgaatcgaaccaactcgacaatagtttgggactcgattcgataattaactcgttgaacttggttcatgaaccaaacgagctgaact 33935556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 44421901 - 44421998
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| | ||||||| | ||||| ||| || ||||||||| |||||||| |||||||||||||| ||| ||||||    
T  44421901 tagggctgtcaatgaaccgaaccaactcgacaatagtttgggactcgattcgacaattaactcgttgaacttggttcatgaaccaaacgagctgaact 44421998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 41449884 - 41449790
Alignment:
Q  77 agggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    |||||||||||| | |||||||||||| | |||||||||| |||| ||| || ||||| ||| |||||||| |||||||| ||||||||| ||||    
T  41449884 agggctgacaatgatccgaaccaactcgacaatagttcgaaactcgattcgacaattatctcgttgaacttggttcatgatccaaatgagctgaa 41449790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 36472586 - 36472494
Alignment:
Q  74 aatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||||||||||||| |||||||||||||| ||||||  | || |||| ||| ||||| | | || |||||||| ||||||||||||||||||    
T  36472586 aatagggctgacaatgaaccgaaccaactcgaaaataacttgatactcgattcgataaatgattcgttgaacttggttcatgaaccaaatgag 36472494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 222226 - 222329
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcg 174  Q
    |||||||| |||| |||||||||||||| | ||||||| | ||||  ||| || ||||||||| ||||| || |||||||||||||| ||| |||||| |    
T  222226 tagggctggcaatgaaccgaaccaactcgacaatagtttgggacttgattcgacaattaactcgttgaatttggttcatgaaccaaacgagctgaacttg 222325  T
Q  175 aact 178  Q
    ||||    
T  222326 aact 222329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 33019448 - 33019349
Alignment:
Q  74 aatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| |||||||||| |||||||||||||| |||||||||||| |||| ||| |||||||   || |||||||| ||||| ||| ||||| ||| |||||    
T  33019448 aatatggctgacaatgaaccgaaccaactcaaaaatagttcgatactcgattcgataattggttcgttgaacttggttcacgaatcaaataagtcgaact 33019349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 48634537 - 48634495
Alignment:
Q  130 attaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  48634537 attaactcgttgaacttggttcatgaaccaaatgagttgaact 48634495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 6866681 - 6866758
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttca 152  Q
    ||||||||||||| ||| |||| ||||| ||||||||| ||||||| |||   ||||||| |||||||||||||||||    
T  6866681 tagggctgacaatgaactgaacaaactcgaaaatagtttgagactcgattcagtaattaattcattgaactttgttca 6866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 31491956 - 31491863
Alignment:
Q  80 gctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||| ||||||| |||||| ||||||||| |||| || ||| ||||||||| || ||||||||    |||||||||||||||| |||||    
T  31491956 gctgacaatgaaccgaatcaactcaaaaatagtttgagattcgattcgataattaattcgttgaacttgacacatgaaccaaatgagtcgaact 31491863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 29037792 - 29037870
Alignment:
Q  88 tcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    ||||||| |||| ||| ||||||||| ||||||| ||| | ||||||| |   ||||||||||||||||||||||||||    
T  29037792 tcaaccgtaccagctcgaaaatagtttgagactcgattcggtaattaatttgctgaactttgttcatgaaccaaatgag 29037870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 10096555 - 10096514
Alignment:
Q  136 tcattgaactttgttcatgaaccaaatgagttgaactcgaac 177  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  10096555 tcatcgaacttggttcatgaaccaaatgagttgaacttgaac 10096514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 12710842 - 12710745
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||||||||| || ||| ||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  12710842 tagggctggcaatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaact 12710745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 9505121 - 9505218
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| | |||||||||  |||| ||| || ||||||||| |||||||| |||||||||||||||||||||||||    
T  9505121 tagggctggcaatgaaccgaaccaactcgacaatagttcggaactcgattcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaact 9505218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 40943701 - 40943604
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||||||| |||| |||||||||||   |||||| |||| ||||||||||||||||||| |||||    
T  40943701 tagggctggcaataaaccgaaccaactcgaaaatagttcgatactcgatttgataattggttcattggacttggttcatgaaccaaatgagtcgaact 40943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 30662131 - 30662228
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| | |||||||||||| ||||||||| |||| || ||| ||||||| |||| |||||||| ||||||||| ||||||||| |||||    
T  30662131 tagggctgacaatgagccgaaccaactcgaaaatagtttgagattcgattcgataattgactcgttgaacttggttcatgaatcaaatgagtcgaact 30662228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 52934952 - 52934855
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| ||| |||| ||| |||||||||  | |||||||||  |||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  52934952 taggtctggcaatgaactgaaccaacttgacaatagttcggaactcgattcgataattaactcattgaacttggttcatgaaccaaatgagctgaact 52934855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 52199569 - 52199472
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| || ||||||||||| | ||||||| | ||||| ||| || |||||| || |||||||| |||||||||||||| ||| ||||||    
T  52199569 tagggctgacaatgaatcgaaccaactcgacaatagtttgggactcgattcgacaattaattcgttgaacttggttcatgaaccaaacgagctgaact 52199472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 26049541 - 26049637
Alignment:
Q  77 agggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||| |||| |||||||||||||| ||||||||| |||| || ||| ||||||| ||   |||||||| ||||||||| ||||||||| |||||    
T  26049541 agggctggcaatgaaccgaaccaactcgaaaatagtttgagattcgattcgataattgacctgttgaacttggttcatgaatcaaatgagtcgaact 26049637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 20550202 - 20550298
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaac 171  Q
    |||| ||| |||| |||| ||||||||| |||||||||||| |||| ||| ||||||| | |  |||||||| ||||| ||||||||||||| ||||    
T  20550202 taggcctgtcaatgaaccaaaccaactcgaaaatagttcgatactcgattcgataattgatttgttgaacttggttcacgaaccaaatgagtcgaac 20550298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 54432175 - 54432255
Alignment:
Q  74 aatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcat 153  Q
    |||||||||| |||| |||||||||||||| |||||||||||| |||| ||| |||||||   |||||| |||| ||||||    
T  54432175 aatagggctggcaatgaaccgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcat 54432255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 18074708 - 18074621
Alignment:
Q  84 acaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    ||||| ||| || ||||||| || | |||||||||||| ||||||||||||| || ||||| ||  ||||||||| ||||||||||||    
T  18074708 acaatgaactgagccaactcgaatagagttcgagactcgatttgataattaattcgttgaatttgtttcatgaactaaatgagttgaa 18074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 1674705 - 1674672
Alignment:
Q  139 ttgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||||||||||||||||||||||||    
T  1674705 ttgaacttggttcatgaaccaaatgagttgaact 1674672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 48730856 - 48730924
Alignment:
Q  95 aaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaat 162  Q
    ||||||||| |||||||||||||| || ||||| ||||||| || || |||||  ||||||||||||||    
T  48730856 aaccaactcgaaaatagttcgagattcgatttgctaattaattcgttaaacttgattcatgaaccaaat 48730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 21228 - 21141
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaa 161  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| | || |||||||| ||||||||||||||    
T  21228 atagggctgacaatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttgaacttggttcatgaaccaaa 21141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 39478190 - 39478087
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaactcg 174  Q
    |||||||| |||| |||||||||||||| |||||||||||| |||| ||| |||||||   |||||| |||| ||||||||||||||||||||||||| |    
T  39478190 tagggctggcaatgaaccgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagttgaacttg 39478091  T
Q  175 aact 178  Q
    ||||    
T  39478090 aact 39478087  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 43384925 - 43384837
Alignment:
Q  85 caatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||| |||||||||||||| |||||||||||||| || ||| ||||||||| || ||||| || |||||||||||||||||||||||||    
T  43384925 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattaattcgttgaagttggttcatgaaccaaatgagttgaact 43384837  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 3308074 - 3307984
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    |||||||| |||| |||||||||||||| | |||||||||  |||| ||| || ||||||||| | |||||| ||||||||||||||||||    
T  3308074 tagggctggcaatgaaccgaaccaactcgacaatagttcggaactcgattcgacaattaactcgtagaacttagttcatgaaccaaatgag 3307984  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 12378492 - 12378395
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| ||||||| |||||||| ||||| |||||||| ||||| ||  || ||||||| | || |||||||| ||||| |||||||||||||||||||    
T  12378492 tagggttgacaatgaaccgaacaaactcaaaaatagtccgagattcggttcgataattgattcgttgaacttggttcacgaaccaaatgagttgaact 12378395  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 32740765 - 32740676
Alignment:
Q  90 aaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaatgagttgaactcgaact 178  Q
    |||||||||||||| | ||||||| |  ||||| || || ||||||||||||||| || |||||||||||||||||  |||||| |||||    
T  32740765 aaccgaaccaactcgacaatagtttggaactcaattcgacaattaactcattgaatttggttcatgaaccaaatgaactgaacttgaact 32740676  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 1091849 - 1091771
Alignment:
Q  94 gaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaac 171  Q
    |||| ||||| ||||||||| ||||||| ||| ||||||||| || ||||||||  ||||||||||||| |||| ||||    
T  1091849 gaacaaactcaaaaatagtttgagactcgattcgataattaattcgttgaacttgattcatgaaccaaacgagtcgaac 1091771  T

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Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 14566 - 14469
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||| | |||||||||||| |||| ||| | ||||| | ||||||||||| ||||||||||||||||| |||||||    
T  14566 tagggctgacaatgaaccgaaccaacccgaaaatagttcgaaactcgattcggtaattgattcattgaacttggttcatgaaccaaatgatttgaact 14469  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 1501988 - 1501899
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    ||||||||||||| |||||||||||||| | ||| |||||| |||| |||||| ||||||||| |||||||| |||||||||||||||||    
T  1501988 tagggctgacaatgaaccgaaccaactcgacaattgttcgaaactcgatttgacaattaactcgttgaacttcgttcatgaaccaaatga 1501899  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 17441298 - 17441201
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| || |||| |||||||||||| | |||||||||||| |||| ||||| ||||||| || |||||||| |||||||||||||||||||||||||    
T  17441298 tagggttggcaatgaaccgaaccaacccgaaaatagttcgaaactcgatttggtaattaattcgttgaacttagttcatgaaccaaatgagttgaact 17441201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 3081718 - 3081815
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||| ||| |||||||||||| |||| ||| |||||||   || |||||||| ||||| ||||||||||||| |||||    
T  3081718 tagggctggcaatgaaccgaaccagctcgaaaatagttcgatactcgattcgataattggttcgttgaacttggttcacgaaccaaatgagtcgaact 3081815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 13312164 - 13312065
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcg--agactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||||||  | |||| ||| |||||||   |||||| |||| ||||||||||||||||||| |||||    
T  13312164 tagggctggcaatgaaccgaaccaactcgaaaatagttcgatatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaact 13312065  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 4441301 - 4441398
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| | |||| |||||||||||||| | |||||||||| |||| ||| || ||||| ||| |||||||| ||||| |||| ||||||| ||||||    
T  4441301 tagggccggcaatgaaccgaaccaactcgacaatagttcgaaactcgattcgacaattagctcgttgaacttggttcacgaactaaatgagctgaact 4441398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 7437444 - 7437347
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||  ||| |||||||| ||||| |||||||||||| |||| ||| ||||||    || |||||||| ||||| ||||||||||||| |||||    
T  7437444 tagggctggtaatgaaccgaactaactcgaaaatagttcgatactcgattcgataatgggttcgttgaacttggttcacgaaccaaatgagtcgaact 7437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 18099950 - 18099865
Alignment:
Q  82 tgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagt 166  Q
    ||||||| |||| ||||||||| |||| |||| ||||||| ||| ||||||  | || |||||||| ||||| |||||||||||||    
T  18099950 tgacaatgaaccaaaccaactcgaaaaaagtttgagactcgattcgataatggattcgttgaacttggttcacgaaccaaatgagt 18099865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 9463405 - 9463449
Alignment:
Q  126 gataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  9463405 gataattaactcattaaacttagtttatgaaccaaatgagctgaa 9463449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 11460014 - 11460102
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatg 163  Q
    ||||| || |||| |||||| ||||||| | |||||||||  |||| ||| ||||||| | || |||||||| ||||||||||||||||    
T  11460014 tagggttggcaatgaaccgatccaactcaataatagttcggaactcgattcgataattgattcgttgaacttggttcatgaaccaaatg 11460102  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 27196217 - 27196120
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| | || || || || ||||||||||||||||||| |||||    
T  27196217 tagggctgacaatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttaaatttggttcatgaaccaaatgagtcgaact 27196120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 32945021 - 32945118
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||| ||| | ||||| | || || ||||| ||||||||||||||||||| |||||    
T  32945021 tagggctgacaatgaaccgaaccaactcgaaaatagttcgaaactcgattcggtaattgattcgttaaacttggttcatgaaccaaatgagtcgaact 32945118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 1840687 - 1840784
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactcattt-gataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| || |||| |||||||||||||| | ||||||||   ||||| || || ||||||||| |||||||| |||||||||||||||||| ||||||    
T  1840687 tagggttggcaatgaaccgaaccaactcgacaatagttcagaactcaattcgacaattaactcgttgaacttggttcatgaaccaaatgagctgaact 1840784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 5382825 - 5382921
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaac 171  Q
    ||||||||||||| ||| |||||||||  |||| |||||||||||| ||| | ||||||| || ||||||||  ||||||||||||| |||| ||||    
T  5382825 tagggctgacaatgaactgaaccaacttgaaaagagttcgagactcgattcggtaattaattcgttgaacttgattcatgaaccaaacgagtcgaac 5382921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 19282119 - 19282211
Alignment:
Q  81 ctgacaatcaaccgaaccaactccaaaatagttcgagact-catttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| | | |||||||||| | |||||||||  ||| |||| || ||||||||| |||||||| |||||||||||||||||| ||||||    
T  19282119 ctgacaatgagctgaaccaactcgataatagttcggaacttcattcgacaattaactcgttgaacttggttcatgaaccaaatgagctgaact 19282211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 27450579 - 27450678
Alignment:
Q  74 aatagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||| || ||| ||||||| | || ||||| ||  |||||||||| ||||||| |||||    
T  27450579 aatagggctggcaatgaaccgaaccaactcgaaaatagtgcgagattcgattcgataattgattcgttgaatttgattcatgaacctaatgagtcgaact 27450678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 31022003 - 31021908
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaa 170  Q
    |||| |||||||| |||||||||||||| || ||||||||  |||| | | |||||||||||| ||||  || |||||||||||||||||| ||||    
T  31022003 taggactgacaatgaaccgaaccaactcgaatatagttcggaactcgactcgataattaactcgttgagtttggttcatgaaccaaatgagctgaa 31021908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 39414319 - 39414225
Alignment:
Q  79 ggctgacaatcaaccgaaccaactccaaaatagttcgagac-tcatttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| ||| |||||||||||||| | |||||||||| || | ||| || ||||||||| |||||||| || |||||||| |||||| ||||||    
T  39414319 ggctgaaaatgaaccgaaccaactcgacaatagttcgaaacttaattcgacaattaactcgttgaacttggtccatgaacctaatgagctgaact 39414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 10328070 - 10327981
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    ||||||||||||| |||||||||||||| ||||| |||| | |||| ||| | ||||| | || ||||||||  ||||||||||||||||    
T  10328070 tagggctgacaatgaaccgaaccaactcgaaaattgttcaaaactcgattcggtaattgattcgttgaacttgattcatgaaccaaatga 10327981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 39407546 - 39407449
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||  ||| |||||||||||||| |||||||| ||||| || ||| ||||||| | || ||||||||  |||||||||| ||||||| |||||    
T  39407546 tagggctggtaatgaaccgaaccaactcaaaaatagtgcgagattcgattcgataattgattcgttgaacttgattcatgaacctaatgagtcgaact 39407449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 19716318 - 19716226
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactcatttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||| |||| |||||||||||||| |||||||| ||||    ||| ||||||| | || ||||||||  |||||||||| ||||||| |||||    
T  19716318 tagggctggcaatgaaccgaaccaactcgaaaatagtgcgag----attcgataattgattcgttgaacttgattcatgaacctaatgagtcgaact 19716226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 26298451 - 26298360
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagt 166  Q
    |||||||| |||| |||||||||||||| ||||||||  |||| || ||| ||||||| | || ||||||||  |||||||||| |||||||    
T  26298451 tagggctggcaatgaaccgaaccaactcaaaaatagtgtgagattcgattcgataattgattcgttgaacttgattcatgaacctaatgagt 26298360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 26299973 - 26299896
Alignment:
Q  90 aaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagt 166  Q
    |||||||||||||| |||||||| ||||| || ||| ||||||| | || ||||||||  |||||||||| |||||||    
T  26299973 aaccgaaccaactcgaaaatagtgcgagattcgattcgataattgattcgttgaacttcattcatgaacctaatgagt 26299896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 28247550 - 28247473
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgaga-ctcatttgataattaactcattgaactttgttca 152  Q
    ||||||||||||| ||||||||||| || |||||||||||| |  | ||||||||||| | || |||||||| |||||    
T  28247550 tagggctgacaatgaaccgaaccaattcgaaaatagttcgatatttgatttgataattgattcgttgaacttggttca 28247473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 34724754 - 34724851
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||| | |||| |||||||||||||  ||||||||  |||| || ||||||||||| | || ||||||||  |||||||||| ||||||| |||||    
T  34724754 tagggccggcaatgaaccgaaccaacttgaaaatagtgtgagattcgatttgataattgattcgttgaacttgattcatgaacctaatgagtcgaact 34724851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 36523895 - 36523798
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| ||||||| |||||||  ||||| || | ||| |||||||  ||| ||||||  | ||||||||||| ||||||||||||||||||| |||||    
T  36523895 tagggatgacaatgaaccgaattaactcgaataaagtccgagacttgattcgataatagattcattgaacttggttcatgaaccaaatgagtcgaact 36523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 27464571 - 27464669
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagac-tcatttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| | ||| ||||||| | |  ||||| || ||||||||||||||||||| |||||    
T  27464571 atagggctgacaatgaaccgaaccaactcgaaaatagttcgagacttgattcgataattgatttgttgaatttggttcatgaaccaaatgagtcgaact 27464669  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 3409188 - 3409277
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatga 164  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||| ||| || ||||||||| |||||||| |||||||||||||||||    
T  3409188 tagggctggcaatgaaccgaaccaactcgacaatagttcgaaactcgattcgacaattaactcgttgaacttggttcatgaaccaaatga 3409277  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 44740486 - 44740580
Alignment:
Q  79 ggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| |||| |||||||||||||| | ||||||| | ||||| ||| || ||||||||| |||||||| |||||||||||||| ||| ||||||    
T  44740486 ggctggcaatgaaccgaaccaactcgacaatagtttgggactcgattcgacaattaactcgttgaacttggttcatgaaccaaacgagctgaact 44740580  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 24844670 - 24844763
Alignment:
Q  80 gctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||||||| | |||||||||||| | |||||||||| |||| ||| |  ||||| ||| |||||||| |||||||||||||||||| ||||||    
T  24844670 gctgacaatgatccgaaccaactcgataatagttcgaaactcgattcggcaattatctcgttgaacttggttcatgaaccaaatgagctgaact 24844763  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 29807046 - 29806956
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgag 165  Q
    |||||||| |||| ||||||||||| || |||||||||| |||||| ||| ||||||| | || |||||||| ||| | ||||||||||||    
T  29807046 tagggctggcaatgaaccgaaccaattcgaaaatagttcaagactcgattcgataattgattcgttgaacttggtttacgaaccaaatgag 29806956  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 28968960 - 28968869
Alignment:
Q  76 tagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagt 166  Q
    ||||||||||||| |||| || |||| | | ||||||| ||||||| ||| |||||||||||| ||||| |  |||| ||||||||||||||    
T  28968960 tagggctgacaatgaaccaaatcaacccgagaatagtttgagactcgattcgataattaactcgttgaattcagttcgtgaaccaaatgagt 28968869  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 11531 - 11433
Alignment:
Q  75 atagggctgacaatcaaccgaaccaactccaaaatagttcgagactc-atttgataattaactcattgaactttgttcatgaaccaaatgagttgaact 172  Q
    ||||| |||||||| |||||||||||||| | ||||||| |  |||| ||| || ||||| ||| | |||||| |||||||||||||||||| ||||||    
T  11531 ataggactgacaatgaaccgaaccaactcgataatagtttggaactcgattcgacaattacctcgtcgaacttagttcatgaaccaaatgaggtgaact 11433  T

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