View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_15 (Length: 301)
Name: NF1538_high_15
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 51808713 - 51808993
Alignment:
| Q |
2 |
aatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactattagaagaagtttaagtttcaggctgtt |
101 |
Q |
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| T |
51808713 |
aatgaagggagattattgttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactattagaag---ttttagtttcaggctgtt |
51808809 |
T |
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| Q |
102 |
acttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaannnnnnnnnataaaatttgtcaatataggataggatagtc |
201 |
Q |
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| T |
51808810 |
acttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaatttttttttataaaatttgtctatataggataggatagtc |
51808909 |
T |
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| Q |
202 |
atggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatg |
285 |
Q |
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| T |
51808910 |
atggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatg |
51808993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 51804794 - 51804852
Alignment:
| Q |
2 |
aatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
61 |
Q |
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| T |
51804794 |
aatgaagggagattattgttatggttgaaaa-aggatggaaagaaaagtaaatagaaaga |
51804852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 51773201 - 51773259
Alignment:
| Q |
3 |
atgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
61 |
Q |
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| T |
51773201 |
atgaaaggaggttatttttatggtagaaaacaagatggaaggagaagtaaatagaaaga |
51773259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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