View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1538_high_18 (Length: 266)
Name: NF1538_high_18
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 53123079 - 53123332
Alignment:
| Q |
15 |
aaatacatcatccaactcatctaaacaagaattcataagttcgatagatgtgtcctacaaccgataggtatatcaatctatacatgcttttgatgatttg |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123079 |
aaatacatcatccaactcatccaaacaagaattcataagctcgatagatgtgtcctacaaccgataggtatatcaatctatacatgcttttgatgatttg |
53123178 |
T |
|
| Q |
115 |
aacaatattcagagggactggaacaaagttacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactcgaaaaaggcaat |
214 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123179 |
agcaatattcagagggactggaacaaaggtacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactcgaaaaaggcaat |
53123278 |
T |
|
| Q |
215 |
tatagactgagaacttacactgcaattcttggtaac--tgtgaagagtgaaaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53123279 |
tatagactgagaacttacactgcaattcttggtaactgtgtgaagagtgaaaaa |
53123332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University