View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_20 (Length: 263)
Name: NF1538_high_20
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 3218047 - 3217805
Alignment:
| Q |
20 |
ccaatcacaaggccccacnnnnnnnaacttcaaaatctctacatggactcactccagaaactagacctctcagtttttatatttctcaatcttagtttcc |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218047 |
ccaatcacaaggccccactttctttaacttcaaaatctctacatggactcactccagaaactagacctctcagtttttatatttctcaatcttagtttcc |
3217948 |
T |
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| Q |
120 |
atgcagataaccactagttttcgtagtttgttatcctaactcgaggactaaattgtatagagagtggtggtatttctctcttctctaataccaattaagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217947 |
atgcagataaccactagttttcgtagtttgttatcctaactcaaggactaaattgtatagagagtggtggtatttctctcttctctaataccaattaagc |
3217848 |
T |
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| Q |
220 |
acacatggttgtttgatagtgcgtataataagtgtcagttgtg |
262 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3217847 |
acacatgcttgtttgatagtgcgtataataagtgtcagttgtg |
3217805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 3223169 - 3223115
Alignment:
| Q |
75 |
agaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataa |
129 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3223169 |
agaagctagacctctcagtttatatatttctcaatcttagtttccatgcagataa |
3223115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 49664797 - 49664876
Alignment:
| Q |
51 |
aaaatctctacatggactcactccagaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataac |
130 |
Q |
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||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
49664797 |
aaaatttcttcatggactaactccagaatctagacctctcagttttgatatttctcaatcttagtttccatgcatataac |
49664876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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