View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_25 (Length: 254)
Name: NF1538_high_25
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3217813 - 3217568
Alignment:
| Q |
1 |
tcagttgtgcattgttgaggacttctccatctgaaatgaaatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttc |
100 |
Q |
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| T |
3217813 |
tcagttgtgtattgttgaggacttctccatctgaaatgaaatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttc |
3217714 |
T |
|
| Q |
101 |
tcttatattgaatgatagtacttctaaattatacctcagtttatttaattaacttatcatatttaatcatttttgcttctaaattcccttaatcttcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3217713 |
tcttatattgaatgatagtacttctaaattatacctcagtttatttaattaacttatcatatttaatcatttttgcttctaatttcccttaatcttcagt |
3217614 |
T |
|
| Q |
201 |
aattccctatgtacgattatcatttacacacatgcctatgcttctc |
246 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
3217613 |
aattccctatgtacgattatcattaacacacatgcccatgattctc |
3217568 |
T |
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