View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_30 (Length: 245)
Name: NF1538_high_30
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 32897265 - 32897490
Alignment:
| Q |
20 |
aacatgaacaacaacagtaataacaacagtgatgcacatttaccacctggttttcgtttccacccaactgatgaagaactcattacattctaccttctca |
119 |
Q |
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| T |
32897265 |
aacatgaacaacaacagtaataacaacagtgatgcacatttaccacctggttttcgtttccacccaactgatgaagaactcatcacattctaccttctca |
32897364 |
T |
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| Q |
120 |
aaaaagttcttgacactactttcactgcaagagccatagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggtaactacttctcaattat |
219 |
Q |
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| T |
32897365 |
aaaaagttcttgacaccactttcactgcaagagccatagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggtaactaattatcaattat |
32897464 |
T |
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| Q |
220 |
ttttctttctgaatccatttaaagtt |
245 |
Q |
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|||||||| ||||||||| ||||||| |
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| T |
32897465 |
ttttctttatgaatccatataaagtt |
32897490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 33761931 - 33761980
Alignment:
| Q |
154 |
catagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggta |
203 |
Q |
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| T |
33761931 |
catagctgaagttgatctctacaaatttgatccatgggagctaccaggta |
33761980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 8449721 - 8449758
Alignment:
| Q |
62 |
ccacctggttttcgtttccacccaactgatgaagaact |
99 |
Q |
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| T |
8449721 |
ccaccagggtttcgtttccacccaactgatgaagaact |
8449758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 29102185 - 29102218
Alignment:
| Q |
159 |
ctgaagttgatctcaacaagtgtgaaccatggga |
192 |
Q |
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| T |
29102185 |
ctgaagttgatctctacaagtgtgaaccatggga |
29102218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 54270180 - 54270135
Alignment:
| Q |
60 |
taccacctggttttcgtttccacccaactgatgaagaactcattac |
105 |
Q |
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| T |
54270180 |
taccacctggtttcaggtttcacccaactgatgaagaactcattac |
54270135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 50580890 - 50580854
Alignment:
| Q |
167 |
gatctcaacaagtgtgaaccatgggagctaccaggta |
203 |
Q |
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| T |
50580890 |
gatctcaacaaatctgaaccatgggagctaccaggta |
50580854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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