View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_32 (Length: 238)
Name: NF1538_high_32
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39758367 - 39758149
Alignment:
| Q |
1 |
atgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccgaaattgaggagt |
100 |
Q |
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| T |
39758367 |
atgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccaaaattgaggagt |
39758268 |
T |
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| Q |
101 |
tgaaggagaaattaatggataaggaaaatgaattgcaaggcattgtggatgagaatgagacgttgaatttgaagcttgaaaagagcatgtcgttggcatc |
200 |
Q |
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| T |
39758267 |
tgaaggagaaattgatggataaggaaaatgaattgcaaggcattgtggatgagaatgagacgttgaatttgaagcttgaaaagagcatgtcgttggcatc |
39758168 |
T |
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| Q |
201 |
gaaaaaagaaaatgaactt |
219 |
Q |
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||||||||||||||||||| |
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| T |
39758167 |
gaaaaaagaaaatgaactt |
39758149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 39764102 - 39763894
Alignment:
| Q |
2 |
tgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaatcagagggaatccgaattggatagaaagaaatccgaaattgaggagtt |
101 |
Q |
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||||||| | |||||| || |||||||| ||| || | |||||||||| || ||||||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
39764102 |
tgaagattaggaatgcctatgagttgatcgaacgggtaaaatcagaattgagtcagagggagtccgaattggaaagaaagaaagccgaaattgaggagtt |
39764003 |
T |
|
| Q |
102 |
gaaggagaaattaatggataaggaaaatgaattgcaaggcattgtggatgagaatgagacgttgaatttgaagcttgaaaagagcatgtcgttggcatcg |
201 |
Q |
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||| |||||| | ||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||| || |||| || ||||| |
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| T |
39764002 |
gaaagagaaactgatggataaggaaaatgagttgcaaggtattgtgaatgagaatgagaggttgaatttgaagcttgaaaaaagtgtgtcactgtcatcg |
39763903 |
T |
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| Q |
202 |
aaaaaagaa |
210 |
Q |
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||||||||| |
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| T |
39763902 |
aaaaaagaa |
39763894 |
T |
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Back To:
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