View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_36 (Length: 204)
Name: NF1538_high_36
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_36 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 6694846 - 6695009
Alignment:
| Q |
18 |
atgtttctctttcttctatatgaaccaccaaatatctttagaggaccttaaacccttattttgggcacaactctattttagcctttagg--tatatagtc |
115 |
Q |
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| T |
6694846 |
atgtttctctttcttctatataaaccaccaaatatctttagtggaacttaaacccttattttgggcacaactctattttagcctttaggtatatataatc |
6694945 |
T |
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| Q |
116 |
catcttattaacatctccannnnnnnnnnaataatatttaacatatcaatttcatcatttataaaa |
181 |
Q |
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| T |
6694946 |
catcttattaacatctcca--ttttttttaataatatttaacatatcaatttcatcatttataaaa |
6695009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 10620932 - 10620900
Alignment:
| Q |
171 |
catttataaaagggttaaatatgtttttagtcc |
203 |
Q |
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| T |
10620932 |
catttataaaagggttaaatatgtttttggtcc |
10620900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 22954035 - 22954067
Alignment:
| Q |
172 |
atttataaaagggttaaatatgtttttagtccc |
204 |
Q |
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| T |
22954035 |
atttataatagggttaaatatgtttttagtccc |
22954067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 31435907 - 31435942
Alignment:
| Q |
169 |
atcatttataaaagggttaaatatgtttttagtccc |
204 |
Q |
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| T |
31435907 |
atcatttataatagggttaaatatgtttttagtccc |
31435942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 45539741 - 45539708
Alignment:
| Q |
171 |
catttataaaagggttaaatatgtttttagtccc |
204 |
Q |
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| T |
45539741 |
catttataaaagggttaaatatgtttttggtccc |
45539708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 3614253 - 3614225
Alignment:
| Q |
176 |
ataaaagggttaaatatgtttttagtccc |
204 |
Q |
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| T |
3614253 |
ataaaagggttaaatatgtttttagtccc |
3614225 |
T |
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