View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_high_4 (Length: 447)
Name: NF1538_high_4
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 227 - 444
Target Start/End: Original strand, 9814741 - 9814958
Alignment:
| Q |
227 |
atagaaacaattttggacttgatctatgttctattagactatgaaagactaaaactgatatttttagataaataataatttgcaaaaaatcataattaaa |
326 |
Q |
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| T |
9814741 |
atagaaacaattttggacttgatctatgttctatttgactaagaaagactaaaattgatattttgacatcaataataatttgcaaaaaatcataattaaa |
9814840 |
T |
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| Q |
327 |
tgtaatcatttgtcaatgtcgtatgagacgttgatatgtattagacaacgaaacgtttctcttagatgtatatgctaaagaggtatttaacaatgtagtt |
426 |
Q |
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| T |
9814841 |
tgtaattatttgtcaatgtcgtatcagacgttgatatgtattaaacaacgaaacgtttctcttagaagtatatgctacagaggtatttaacaatgtagtt |
9814940 |
T |
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| Q |
427 |
ttccagaattatctaccc |
444 |
Q |
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| T |
9814941 |
ttccaatattatataccc |
9814958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 9709644 - 9709698
Alignment:
| Q |
93 |
ataaaacaaagtggtaa-cacaaa-tataaagaaatgtgttatttgatcacttga |
145 |
Q |
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| T |
9709644 |
ataaaacaaagtggtaaacacaaaatataaagaaatgtgatatttgatcatttga |
9709698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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