View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1538_high_9 (Length: 363)
Name: NF1538_high_9
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 37166227 - 37165890
Alignment:
| Q |
11 |
atcatcaccggtaatcgtagcgtggttgatggttggaccactttccaatccgcaacttttggtaagctaattaatagttcgaacacacgacacactctaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37166227 |
atcatcaccggtaatcgtagcgtggttgatggttggaccactttccaatccgcaacttttggtaagctaattaatagttcgaacacacgacacactctaa |
37166128 |
T |
|
| Q |
111 |
taacgtttaaattttactctcataacgcgtataatttatatgcgttatgatagatataatcattataactcaagtatcatggtcatctgatacacacact |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
37166127 |
taacgtttaaattttactctcataacgcgtataatttatatgcgttatgatagatataatcattataactcaagtatcaaggtcatctgataaacacact |
37166028 |
T |
|
| Q |
211 |
cacgaaacttttggtcacgcaccaggtcatctaatacgtaaattgttacaaatcacaggattaaagagattaagattcatcttatagggaaaataacttg |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37166027 |
cacgaaacttttggtcacgcgccaggtcatctaatacgcaaattgttacaaatcacaggattaaagagattaagattcatcttatagggaaaataacttg |
37165928 |
T |
|
| Q |
311 |
aaagcttgatagataggaataaaagatggtaaataaat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37165927 |
aaagcttgatagataggaataaaagatggtaaataaat |
37165890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University