View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1538_low_12 (Length: 334)

Name: NF1538_low_12
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1538_low_12
NF1538_low_12
[»] chr6 (8 HSPs)
chr6 (21-320)||(6519029-6519330)
chr6 (221-316)||(28867176-28867271)
chr6 (223-310)||(34713494-34713581)
chr6 (223-314)||(32871777-32871868)
chr6 (230-314)||(2130516-2130600)
chr6 (223-310)||(6784730-6784817)
chr6 (223-286)||(11301829-11301892)
chr6 (125-175)||(2484781-2484831)
[»] chr8 (12 HSPs)
chr8 (223-314)||(29414375-29414466)
chr8 (221-314)||(24068141-24068233)
chr8 (223-314)||(38585112-38585203)
chr8 (221-316)||(5718469-5718572)
chr8 (129-212)||(18540322-18540405)
chr8 (223-274)||(29543676-29543727)
chr8 (238-309)||(43063881-43063952)
chr8 (238-314)||(26415560-26415636)
chr8 (250-316)||(5686312-5686378)
chr8 (223-313)||(35393733-35393823)
chr8 (221-316)||(36947247-36947344)
chr8 (125-193)||(33017257-33017324)
[»] chr4 (23 HSPs)
chr4 (222-316)||(25817657-25817751)
chr4 (221-309)||(5288513-5288601)
chr4 (238-314)||(29065302-29065378)
chr4 (125-212)||(11592118-11592205)
chr4 (233-314)||(19482521-19482602)
chr4 (223-316)||(24060569-24060662)
chr4 (233-314)||(42504218-42504299)
chr4 (233-316)||(16528566-16528652)
chr4 (223-285)||(42108739-42108801)
chr4 (257-314)||(37762834-37762891)
chr4 (223-275)||(13218448-13218500)
chr4 (235-314)||(2765392-2765471)
chr4 (125-184)||(20770963-20771022)
chr4 (129-212)||(37109320-37109403)
chr4 (129-179)||(15180795-15180845)
chr4 (125-175)||(27104993-27105043)
chr4 (129-211)||(37274428-37274510)
chr4 (129-211)||(51954139-51954221)
chr4 (129-194)||(2185001-2185066)
chr4 (129-178)||(27372626-27372675)
chr4 (129-177)||(28635755-28635803)
chr4 (234-314)||(30220705-30220783)
chr4 (241-309)||(51304328-51304396)
[»] chr5 (9 HSPs)
chr5 (223-316)||(25493812-25493905)
chr5 (223-314)||(3040284-3040375)
chr5 (223-310)||(30700898-30700985)
chr5 (221-314)||(20359902-20359997)
chr5 (238-310)||(30735349-30735421)
chr5 (135-194)||(34984848-34984907)
chr5 (129-179)||(18595970-18596020)
chr5 (129-194)||(5156094-5156159)
chr5 (134-194)||(14285203-14285263)
[»] chr1 (18 HSPs)
chr1 (221-314)||(29657355-29657448)
chr1 (223-316)||(43537167-43537260)
chr1 (223-314)||(23906630-23906721)
chr1 (223-314)||(35413019-35413110)
chr1 (223-316)||(10061585-10061678)
chr1 (238-286)||(13085093-13085141)
chr1 (223-287)||(49313600-49313664)
chr1 (125-216)||(4280416-4280507)
chr1 (223-314)||(26469937-26470028)
chr1 (223-315)||(11470017-11470109)
chr1 (223-275)||(21540067-21540119)
chr1 (129-197)||(51814533-51814601)
chr1 (238-285)||(1062836-1062883)
chr1 (125-212)||(8904438-8904525)
chr1 (223-314)||(35149688-35149779)
chr1 (125-212)||(48619174-48619261)
chr1 (129-194)||(2799904-2799969)
chr1 (129-177)||(16893453-16893501)
[»] chr2 (20 HSPs)
chr2 (221-316)||(4434288-4434386)
chr2 (223-310)||(13716738-13716825)
chr2 (221-287)||(32976073-32976139)
chr2 (129-212)||(19244133-19244216)
chr2 (223-314)||(19945748-19945839)
chr2 (223-316)||(35457394-35457486)
chr2 (224-316)||(27407416-27407508)
chr2 (223-314)||(20142961-20143052)
chr2 (223-314)||(37714416-37714507)
chr2 (129-212)||(42602578-42602661)
chr2 (223-296)||(37899545-37899618)
chr2 (223-316)||(38320222-38320315)
chr2 (238-316)||(14131164-14131242)
chr2 (233-306)||(24183974-24184047)
chr2 (238-314)||(27007177-27007253)
chr2 (129-212)||(34041557-34041640)
chr2 (129-212)||(37480099-37480182)
chr2 (129-215)||(13803516-13803602)
chr2 (241-314)||(3167907-3167980)
chr2 (129-197)||(4060183-4060251)
[»] chr7 (16 HSPs)
chr7 (221-314)||(21882793-21882886)
chr7 (223-316)||(46297606-46297699)
chr7 (222-314)||(22631472-22631564)
chr7 (221-275)||(8123682-8123736)
chr7 (247-316)||(1985023-1985092)
chr7 (223-314)||(20125583-20125674)
chr7 (221-314)||(23730529-23730620)
chr7 (221-310)||(24250482-24250571)
chr7 (129-195)||(41519079-41519145)
chr7 (238-314)||(46413767-46413846)
chr7 (123-207)||(21569995-21570079)
chr7 (132-212)||(22760887-22760967)
chr7 (223-286)||(23611801-23611864)
chr7 (137-195)||(5273567-5273625)
chr7 (141-194)||(37162331-37162384)
chr7 (129-201)||(11700200-11700271)
[»] chr3 (13 HSPs)
chr3 (221-314)||(34905837-34905930)
chr3 (223-314)||(1632802-1632892)
chr3 (223-314)||(2671896-2671987)
chr3 (221-310)||(48897708-48897797)
chr3 (238-314)||(18271987-18272063)
chr3 (238-309)||(26442957-26443028)
chr3 (125-179)||(15048026-15048080)
chr3 (221-274)||(10593524-10593577)
chr3 (129-194)||(44743824-44743889)
chr3 (221-276)||(45852996-45853051)
chr3 (162-212)||(39976433-39976483)
chr3 (125-174)||(26673276-26673325)
chr3 (125-178)||(37504341-37504394)
[»] scaffold0122 (1 HSPs)
scaffold0122 (221-316)||(18625-18720)
[»] scaffold0018 (1 HSPs)
scaffold0018 (223-314)||(69949-70040)
[»] scaffold0126 (1 HSPs)
scaffold0126 (142-201)||(25329-25388)
[»] scaffold0008 (1 HSPs)
scaffold0008 (125-212)||(49330-49417)
[»] scaffold0211 (1 HSPs)
scaffold0211 (125-219)||(24070-24164)
[»] scaffold0006 (1 HSPs)
scaffold0006 (144-210)||(162993-163059)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 6519029 - 6519330
Alignment:
Q  21 cgactaaacaaaacaacttaaacgctacgtggacatttcaagatatattaaggaaggagcattcatatttatttagagagattttatcaagannnnnnnn 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  6519029 cgactaaacaaaagaacttaaacgctacgtggacatttcaagatatattaaggaaggagcattcatatttatttagagagattttatcaagatttttttt 6519128  T
Q  121 nga--caagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaatatcatta 218  Q
      |  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  6519129 ttaaacaagctaaattaacccacttaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactttcaagtcccaagtcaatatcatta 6519228  T
Q  219 gtgattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatgag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||    
T  6519229 gtgattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgag 6519328  T
Q  319 tt 320  Q
    ||    
T  6519329 tt 6519330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 316
Target Start/End: Original strand, 28867176 - 28867271
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||||| ||||||| ||||||| || ||| ||||||||||||||||||||  | |||||||| || ||||| || ||||||||||||||||    
T  28867176 gattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaatg 28867271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 34713494 - 34713581
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||| |||| ||||||||| |||||||   |||||||||||||||||| ||||||||||  |||||||||||||||| |||||    
T  34713494 ttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaag 34713581  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 32871868 - 32871777
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| |||||||||| || |||  ||||||||||||||||||| || |||||||  || ||||| |||||||||||||||||    
T  32871868 ttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaa 32871777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 2130600 - 2130516
Alignment:
Q  230 aaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||| ||||||||||  |||||  ||||||||||||||||||| || |||||||| || || || |||||||||||||||||    
T  2130600 aaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaa 2130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 6784817 - 6784730
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||| |||| ||||| ||||  |||||| ||||||||||||||||||| || |||||||  ||  ||||||||||||||||||    
T  6784817 ttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaag 6784730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 11301829 - 11301892
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaa 286  Q
    ||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||  ||||||||||    
T  11301829 ttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaa 11301892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 2484831 - 2484781
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagac 175  Q
    ||||||||||| ||||||||||||| | ||||||| |||||||||| ||||    
T  2484831 aagttaaattagcccactcaaattgacaccggagagaatcgaacctcagac 2484781  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 29414375 - 29414466
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   | |||||||||| ||||||||||||    
T  29414375 ttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaaggaaa 29414466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 24068233 - 24068141
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||    
T  24068233 gattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgcc-aaaatcaaaggaggtgatggtgtgtaattaaggaaa 24068141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 38585203 - 38585112
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| ||||||||||||| ||| | |||||||||||| ||||| || |||||||| || ||||| |||||||||||| ||||    
T  38585203 ttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaa 38585112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 5718572 - 5718469
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcag--------tcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaagga 312  Q
    ||||||||||| ||||||||||||||| |||||||        |||||||||||| ||||||| || |||||||   | |||||||||||||||||||||    
T  5718572 gattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaagga 5718473  T
Q  313 aatg 316  Q
    ||||    
T  5718472 aatg 5718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 18540405 - 18540322
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    ||||||||||| ||||||||||| || |||| |||||||||| |||||||| | ||||| |||||| || |||| ||| |||||    
T  18540405 taaattaaccctctcaaattggcaccagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaata 18540322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 29543727 - 29543676
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttattt 274  Q
    |||||||||||||| ||||||||||| |||||  ||||||||||||||||||    
T  29543727 ttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 43063952 - 43063881
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaa 309  Q
    ||||| |||| ||||||||||||||||||| |||||||  ||||||||||| | |||||| ||| |||||||    
T  43063952 atcaaaaaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaa 43063881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 26415560 - 26415636
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||| ||||||  ||||||||||| ||||||| || |||| ||| ||  ||||| ||||||||||||||||    
T  26415560 atcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaa 26415636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 5686378 - 5686312
Alignment:
Q  250 tctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||| ||||||||||||||||||||||| |||||||  || |||||  | ||||||||| ||||||    
T  5686378 tctcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatg 5686312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 35393733 - 35393823
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaa 313  Q
    ||||||||| ||||||||||||||  || | || ||||| |||||  ||||  |||||||||||  || ||||||| ||||||||||||||    
T  35393733 ttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggggtgtaattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 36947344 - 36947247
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaa--tgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||||| ||||||| || ||||  ||| ||| |||||||||||||||||| ||| ||||| ||  || |||||| ||| ||||||| ||||||    
T  36947344 gattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggtaatgatgtataattaaagaaatg 36947247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 33017324 - 33017257
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacact 193  Q
    |||||||| |||||| ||||||||||| || |||| |||||||||| |||||||| | || ||||||||    
T  33017324 aagttaaactaaccc-ctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacact 33017257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 25817657 - 25817751
Alignment:
Q  222 attttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| || ||||||| ||| ||||||||||||||||||| |||||    
T  25817657 attttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaagaaaatg 25817751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 5288513 - 5288601
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaa 309  Q
    |||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||  ||  |||||||||||||||||    
T  5288513 gattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaa 5288601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 29065378 - 29065302
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||| |||||| |||||||||||||||||||| || |||||||  || |||||||||||||||||| ||||    
T  29065378 atcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaa 29065302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 11592118 - 11592205
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||||||||||||| |||||||||||  || |||||||||||||||||||||| | | || |||||||||||| |||| ||| |||||    
T  11592118 aagttaaattaaccaactcaaattggttccagagataatcgaacctaagacctggaggaggagcacactctcaggtcccaaggcaata 11592205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 19482521 - 19482602
Alignment:
Q  233 aattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||| ||||||||||| | |||  ||||||||||||||||||| || |||||||  || |||||||||||||||||||||||    
T  19482521 aatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaa 19482602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 24060569 - 24060662
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||||||||||||||||||| ||  |||||||||||||||| |    |||||||  ||  ||||||||||||||||||||||||    
T  24060569 ttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaatg 24060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 42504299 - 42504218
Alignment:
Q  233 aattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||||||||  | |||  |||||||||||||||||||||| |||||||  || |||||| ||||||||||||||||    
T  42504299 aattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaa 42504218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 16528566 - 16528652
Alignment:
Q  233 aattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgat---gtaatggtgtgtaattaaggaaatg 316  Q
    |||||||||| | || ||||||| ||||||||||||||||||| || ||||||||||||    ||||||||||||||||| ||||||    
T  16528566 aattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatggtgtgtaattaaagaaatg 16528652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 42108801 - 42108739
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatca 285  Q
    ||||||||| ||||||||||||||| || |||| ||||||||||||||||| | |||||||||    
T  42108801 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttattagacgaaaatca 42108739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 37762834 - 37762891
Alignment:
Q  257 caattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||| ||||||||||||||||    
T  37762834 caattaaatttgttatttgacgaaagtcaaaggaaataatgatgtgtaattaaggaaa 37762891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 13218448 - 13218500
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 275  Q
    |||||| ||||||| || ||||||| ||||| |||||||||||||||||||||    
T  13218448 ttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttg 13218500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 2765471 - 2765392
Alignment:
Q  235 ttgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||||| |||| || ||||||||||||||||| ||| |||||||   ||  ||||| ||||||||||| ||||    
T  2765471 ttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaa 2765392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 20771022 - 20770963
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaag 184  Q
    ||||||||||||||| ||||||||||| || |||| |||||||| | |||||||| ||||    
T  20771022 aagttaaattaaccccctcaaattggcacctgagagaatcgaacttgagaccttgagaag 20770963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 37109320 - 37109403
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||| |||||| ||||||||||| || |||| |||||||||| |||||||| | || ||||||||| || |||| ||| |||||    
T  37109320 taaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaata 37109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 15180845 - 15180795
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttg 179  Q
    |||| |||||| ||||||||||| || |||| |||||||||||||||||||    
T  15180845 taaactaaccccctcaaattggcaccagagagaatcgaacctaagaccttg 15180795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 27104993 - 27105043
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagac 175  Q
    ||||||||||| ||||||||||||| | ||||||| |||||||||| ||||    
T  27104993 aagttaaattagcccactcaaattgacaccggagagaatcgaacctcagac 27105043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 37274428 - 37274510
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaat 211  Q
    ||||||| |||||| ||||| || || |||| ||||||||||||||||||| | || ||||||||| || |||| ||| ||||    
T  37274428 taaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 51954221 - 51954139
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaat 211  Q
    ||||||| ||||| ||||||| | |||||||||||| ||||| |||||| | | || |||| |||| ||||||| ||||||||    
T  51954221 taaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaat 51954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 2185001 - 2185066
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    |||| |||||| |||||||||||  |||||| |||||||||| |||| ||| |||| |||||||||    
T  2185001 taaactaaccccctcaaattggcatcggagagaatcgaacctgagactttgagaaggagcacactc 2185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 27372626 - 27372675
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagacctt 178  Q
    |||||||||||  ||||||||||  | |||||||||||||||||||||||    
T  27372626 taaattaaccccttcaaattggcatcagagataatcgaacctaagacctt 27372675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 28635803 - 28635755
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagacct 177  Q
    ||||||| ||||| ||||||||| || |||| |||||||||||||||||    
T  28635803 taaattagcccacccaaattggcaccagagagaatcgaacctaagacct 28635755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 30220705 - 30220783
Alignment:
Q  234 attgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||||||| || |||  ||||||| ||||||||| |||| |||||||  || ||| |||||||||||||||||||    
T  30220705 attgatcaagaaaaggtttcac-caattaattttgttattggccggaaatcaaggga-gtattggtgtgtaattaaggaaa 30220783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 51304396 - 51304328
Alignment:
Q  241 aagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaa 309  Q
    |||||||| || || |||||||||||||||||||| || |||||||| ||  |||||| ||| ||||||    
T  51304396 aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaattaa 51304328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 25493812 - 25493905
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |  |||||||| || |||||||||||||||||||||||||    
T  25493812 ttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaatg 25493905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 3040375 - 3040284
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||  |||||||||  || |||||||||||||||||||||||    
T  3040375 ttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaa 3040284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 30700985 - 30700898
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    |||||||||||||  || |||||||||||||| |||||||||||||||||||| ||||||| ||  || |||||| ||||||||||||    
T  30700985 ttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaattaag 30700898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 20359902 - 20359997
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgtt--atttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||  |||| ||  |||||||| ||  ||||||||||||||||| ||||    
T  20359902 gattttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaa 20359997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 30735421 - 30735349
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||  || |||||| || |||||||||    
T  30735421 atcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgggtaattaag 30735349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 34984907 - 34984848
Alignment:
Q  135 aacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    ||||| ||||||||||| || |||| ||||||||||||||||||| | || |||||||||    
T  34984907 aaccccctcaaattggcaccagagagaatcgaacctaagaccttgaggaggagcacactc 34984848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 18595970 - 18596020
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttg 179  Q
    |||| |||||| ||||||||||| || |||| |||||||||||||||||||    
T  18595970 taaactaaccccctcaaattggcaccagagaaaatcgaacctaagaccttg 18596020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 5156094 - 5156159
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    ||||||||||| ||||||||| | || |||| ||||||| || |||||||  ||||||||||||||    
T  5156094 taaattaaccctctcaaattgacaccagagagaatcgaatctgagaccttcagaagaagcacactc 5156159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 14285263 - 14285203
Alignment:
Q  134 taacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    |||||| ||||||||||| || |||| |||||||||| |||||||| | || |||||||||    
T  14285263 taaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 14285203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 29657355 - 29657448
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||    
T  29657355 gattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaa 29657448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 43537260 - 43537167
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||| |||||||  || |||||||||||||||||| ||||||    
T  43537260 ttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaatg 43537167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 23906721 - 23906630
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| ||||||||||||||| || |||| |||||||||||||||||||||  |||||||  || |||||||||||||||||| ||||    
T  23906721 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgtaattaaagaaa 23906630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 35413019 - 35413110
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| |||||||||| ||||||  ||||||||||||||||||| || |||||||  || ||||| |||||||||||||||||    
T  35413019 ttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaa 35413110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 10061585 - 10061678
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||| ||||| |||| ||||||  ||||||||||||||||||| |  |||||||  || |||||| ||||||||||||||||||    
T  10061585 ttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaatg 10061678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 13085141 - 13085093
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaa 286  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  13085141 atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaa 13085093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 49313600 - 49313664
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaa 287  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | || ||||||||    
T  49313600 ttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaaa 49313664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 4280416 - 4280507
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaatatcat 216  Q
    ||||||||||| | ||| |||||| || ||| ||| |||| ||||| |||||||  | |||||||||||||||||||| |||||||||||||    
T  4280416 aagttaaattagctcacccaaattagcaccgaagagaatcaaacctgagaccttcaggagaagcacactctcaagtcccaagtcaatatcat 4280507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 26469937 - 26470028
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| |||||||||||||||||   |||||||||| ||||||   ||||||||||  |  ||||||||||||||||||||||    
T  26469937 ttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaa 26470028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 11470017 - 11470109
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaat 315  Q
    |||||| || |||| ||||||||||| ||| |  ||||||||||||||||||| || |||||||  || |||||| |||||||||||| ||||    
T  11470017 ttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaat 11470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 21540067 - 21540119
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 275  Q
    ||||||||| || | |||||||||||||||||| |||||||||||||||||||    
T  21540067 ttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttg 21540119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 51814601 - 51814533
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctca 197  Q
    ||||||| ||||| ||||||||| ||||||| |||||||||| |||||||| | || ||||||||||||    
T  51814601 taaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctca 51814533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 1062836 - 1062883
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatca 285  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  1062836 atcaagaaaatgtttcagccaattaaatttgttattggccgaaaatca 1062883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 8904525 - 8904438
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||||||| |||||| ||||||||||| || |||| |||||||| | |||||||| | || ||||||||| ||  ||| |||||||||    
T  8904525 aagttaaactaaccccctcaaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaata 8904438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 35149779 - 35149688
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| ||||||||||| ||| |  ||||||||||||||||||| |  |||||||  ||  ||||| ||| ||||||||||||    
T  35149779 ttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaa 35149688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 48619174 - 48619261
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||||||||||  |||||||||||| | ||||||||||| |||||| ||| |||| | | || ||||||| ||||||  |||||||||    
T  48619174 aagttaaattagtccactcaaattgacaccggagataatagaacctgagatcttgaggaaaaacacactcccaagtctcaagtcaata 48619261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 2799969 - 2799904
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    |||| |||||| ||||||||||| || |||| |||||||||| |||||||| | || |||||||||    
T  2799969 taaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 2799904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 16893501 - 16893453
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagacct 177  Q
    ||||||| ||||||||||||| | ||||||| |||||||||| ||||||    
T  16893501 taaattagcccactcaaattgacaccggagaaaatcgaacctgagacct 16893453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 316
Target Start/End: Original strand, 4434288 - 4434386
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaa---atgatgtaatggtgtgtaattaaggaaatg 316  Q
    |||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||   | || ||||||||||||||||||| |||||    
T  4434288 gattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagtaaatg 4434386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 13716825 - 13716738
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||| |||| |||||||||| ||||||  ||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||    
T  13716825 ttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaag 13716738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 32976139 - 32976073
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaa 287  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  32976139 gattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaa 32976073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 19244216 - 19244133
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    ||||||| ||||||||||||||| || |||| |||||||||| |||||||| | || |||||||||||| |||| |||||||||    
T  19244216 taaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaata 19244133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 19945839 - 19945748
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||| || |||| || || |||||||||| ||||||||||||||||||||| || |||| ||  || |||||||||||||||||||||||    
T  19945839 ttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaa 19945748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 35457394 - 35457486
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||| || ||||||| || ||| |||||||||||| ||||||  || |||||||| || |||||||||||||||||||||||||    
T  35457394 ttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatg 35457486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 27407416 - 27407508
Alignment:
Q  224 tttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    |||||||| |||||||||||||||  | |||| |||||||||||||||||| ||| |||||||   |  ||||| ||||||||||||||||||    
T  27407416 tttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaatg 27407508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 20142961 - 20143052
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||| |||||||||| ||||||  ||||||||||| ||||||| || |||||||   | |||||| ||||||||||||||||    
T  20142961 ttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaa 20143052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 37714416 - 37714507
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||  ||| |||||||||| || |||  |||||||||||||||||||  | |||||||| ||  ||||||||||||||||||||||    
T  37714416 ttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaa 37714507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 42602661 - 42602578
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    ||||||| ||||| ||||||||| ||||||| |||| |||||||||||||| |||| ||||||||| || |||| ||| |||||    
T  42602661 taaattagcccacccaaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaata 42602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 37899618 - 37899545
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaat 296  Q
    |||||||||||||| |||||||||| || |||  ||||||||||||| ||||| ||||||||||| || |||||    
T  37899618 ttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggtaat 37899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 38320315 - 38320222
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||| ||||||||||  | |||  |||||||||||||||||||  | |||||||| || |||||| ||||||| ||||||||||    
T  38320315 ttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaatg 38320222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 14131164 - 14131242
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    |||||||||||||||    ||||||||| ||||||||| || |||||||  ||  ||||||||||||||||||||||||    
T  14131164 atcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatg 14131242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 24183974 - 24184047
Alignment:
Q  233 aattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaat 306  Q
    |||| |||||||||| || |||| ||||||||||| |||||||||| || ||||  || |||||||||||||||    
T  24183974 aatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatggtgtgtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 27007177 - 27007253
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||||||  ||| ||||||||||||||| || |||||||  || ||||| ||||||| |||||||||    
T  27007177 atcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaa 27007253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 34041557 - 34041640
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||| |||||| ||||||||||| || |||  |||| ||||| |||||||| | || ||||||||||||  |||||||||||||    
T  34041557 taaactaaccccctcaaattggcaccagagggaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaata 34041640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 37480182 - 37480099
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    ||||||| ||||| ||||||||  |||| || |||||||||| |||||||| | || |||||||||||| |||| ||| |||||    
T  37480182 taaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaata 37480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 13803602 - 13803516
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaatatca 215  Q
    |||| |||||| |||||||||||  | ||||||||||||||| |||||||| | || |||||||||  |||||  ||| ||||||||    
T  13803602 taaactaaccccctcaaattggcatcagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatca 13803516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 3167907 - 3167980
Alignment:
Q  241 aagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||| ||||||  ||||||||||| ||||||| || ||||||||  | |||||| ||||||||||| ||||    
T  3167907 aagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaa 3167980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 4060183 - 4060251
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctca 197  Q
    |||| |||||| ||||||||| | || |||| |||||||||| ||| |||| | |||||||||||||||    
T  4060183 taaactaaccccctcaaattgacaccagagagaatcgaacctgagatcttgaggagaagcacactctca 4060251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 21882886 - 21882793
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||| || ||||||| |||||||  |||||| |||||||||||||||||||||| |||||||  || |||||||||||||||||||||||    
T  21882886 gattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa 21882793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 46297606 - 46297699
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||| |||||||||||||||||| || || ||||||||||||| ||||||||||  ||  ||||||||||||||||||||||||    
T  46297606 ttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaatg 46297699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 22631472 - 22631564
Alignment:
Q  222 attttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||| || |||||||||||||||  |||||| ||||||||||||||||||| || |||||||| ||  |||| |||||||||||||||||    
T  22631472 attttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaa 22631564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 8123682 - 8123736
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 275  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  8123682 gattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 8123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 1985023 - 1985092
Alignment:
Q  247 atgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    ||||||||| |||||||||||||||||||||| |||||||   | |||||||| ||||||||||||||||    
T  1985023 atgtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatg 1985092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 20125583 - 20125674
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||| ||| |  |||| |||  |  ||||||||||||||||| ||||    
T  20125583 ttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaa 20125674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 23730620 - 23730529
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||| ||||||||||||||| || ||||  ||||||||| |||||||| || |||||||  || ||||||  |||||||||||||||    
T  23730620 gattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--gtgtaattaaggaaa 23730529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 24250571 - 24250482
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||||| |||||||||||||||  ||| |  ||||| ||||||||||||| || |||||||  || |||||||| ||||||||||    
T  24250571 gattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaattaag 24250482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 41519079 - 41519145
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactct 195  Q
    ||||||| ||||| ||||||| | ||||||||||||||| || |||||||| |||| ||||||||||    
T  41519079 taaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactct 41519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 46413846 - 46413767
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatt---tgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||||||||||  |||||||||||||||||   || || |||||||  || |||||| ||||||||||||||||    
T  46413846 atcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaa 46413767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 21569995 - 21570079
Alignment:
Q  123 acaagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagt 207  Q
    |||||||||| |||||| ||||||||| | || |||| |||||||| | |||||||| | || ||| ||||||||||||| ||||    
T  21569995 acaagttaaactaaccccctcaaattgacaccagagaaaatcgaacttgagaccttgaggaggagcgcactctcaagtcccaagt 21570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 22760967 - 22760887
Alignment:
Q  132 attaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||| |||||||||||||||  ||| || |||||||||| |||||||| | || ||||||||| || |||| |||||||||    
T  22760967 attagcccactcaaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaata 22760887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 23611864 - 23611801
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaa 286  Q
    |||||| || |||| |||||||||||||||||   |||||||||||||||||| || |||||||    
T  23611864 ttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaa 23611801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 5273567 - 5273625
Alignment:
Q  137 cccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactct 195  Q
    ||||| ||||||||| ||||||| |||| |||||||||||||| | || ||||||||||    
T  5273567 cccacccaaattggcaccggagacaatcaaacctaagaccttgaggaggagcacactct 5273625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 37162331 - 37162384
Alignment:
Q  141 ctcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    ||||||||||| || |||| |||||||| | |||||||| ||||||||||||||    
T  37162331 ctcaaattggcaccagagagaatcgaacttgagaccttgagaagaagcacactc 37162384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11700271 - 11700200
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtc 201  Q
    ||||||| ||||||||||||||| | | ||| |||||||||| |||||||| | || |||| |||||||||||    
T  11700271 taaattagcccactcaaattggcacag-agagaatcgaacctgagaccttgaggaggagcaaactctcaagtc 11700200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 34905837 - 34905930
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||| ||||||| ||||||||||||||| || |||||||||||||||| | ||||||||| || |||||| ||| ||||||||||||    
T  34905837 gattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaa 34905930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 1632802 - 1632892
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    |||||||||||||| |||||||||||||||||   |||||||||||||||||  || |||||||| || |||||||||||||||||| ||||    
T  1632802 ttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaa 1632892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 2671896 - 2671987
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||| ||||||||||||||| || |||| ||||||||||||||||| || |||||||| | ||  ||||| ||||||||||||||||    
T  2671896 ttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaa 2671987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 48897797 - 48897708
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaag 310  Q
    ||||||||||| |||| ||||| ||||||| ||||  | |||||||||||||||| ||||||||||  ||  ||||||||||||||||||    
T  48897797 gattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatggtgtgtaattaag 48897708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 18272063 - 18271987
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||||||| |||||  ||||||||||||||||||| || |||||||  || |||||||||||||||||| ||||    
T  18272063 atcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaa 18271987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 26442957 - 26443028
Alignment:
Q  238 atcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaa 309  Q
    |||||||||| ||||||  ||||||||||||||||||| || |||||||  || ||||||||||||||||||    
T  26442957 atcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaa 26443028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 15048026 - 15048080
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttg 179  Q
    |||||||| |||||| ||||||||||| || ||||||||||||||| ||||||||    
T  15048026 aagttaaactaaccccctcaaattggcaccagagataatcgaacctgagaccttg 15048080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 10593577 - 10593524
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttattt 274  Q
    ||||||||||| |||| ||| |||||||||||||  ||||||||||||||||||    
T  10593577 gattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttattt 10593524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 44743824 - 44743889
Alignment:
Q  129 taaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactc 194  Q
    ||||||||||||| ||||||||| | |||||||||||||||| |||||| | | || |||||||||    
T  44743824 taaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactc 44743889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 45853051 - 45852996
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgc 276  Q
    ||||||||||| |||| |||||||||| ||||||  ||||||||||| ||||||||    
T  45853051 gattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgc 45852996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 39976433 - 39976483
Alignment:
Q  162 atcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    ||||||| | |||||||| |||| ||||||||||||||||| |||||||||    
T  39976433 atcgaacttgagaccttgagaaggagcacactctcaagtcccaagtcaata 39976483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 26673325 - 26673276
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaaga 174  Q
    |||||||||||||||||||||||||||  | |||| ||| ||||||||||    
T  26673325 aagttaaattaacccactcaaattggcatcagagagaattgaacctaaga 26673276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 37504341 - 37504394
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagacctt 178  Q
    ||||||||||| ||||||||||||||   | ||||||||||||||| |||||||    
T  37504341 aagttaaattagcccactcaaattggtttcagagataatcgaacctcagacctt 37504394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 221 - 316
Target Start/End: Original strand, 18625 - 18720
Alignment:
Q  221 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaatg 316  Q
    |||||||| || ||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||  ||  |||||||| |||||||||||||||    
T  18625 gattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatggtgagtaattaaggaaatg 18720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 70040 - 69949
Alignment:
Q  223 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaatgatgtaatggtgtgtaattaaggaaa 314  Q
    ||||||| ||||||||||||||||| || |||| ||||||||||||||||| |||| |||||||  ||  |||||| |||||||||||||||    
T  70040 ttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaa 69949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 25329 - 25388
Alignment:
Q  142 tcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtc 201  Q
    |||||||| | || ||||||||||||||| |||||||| |||| ||||||||| ||||||    
T  25329 tcaaattgacaccagagataatcgaacctgagaccttgagaaggagcacactcccaagtc 25388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 49417 - 49330
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaata 212  Q
    |||||||||||||||||| |||||| | ||||||| |||||||||| | |||| |   || ||||||||||||| ||| ||| |||||    
T  49417 aagttaaattaacccacttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaata 49330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 24164 - 24070
Alignment:
Q  125 aagttaaattaacccactcaaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaatatcattag 219  Q
    ||||||||||| |||||||||||||||  | ||||||||||||||| | || | |   || |||||||||  |||||| ||||||||| ||||||    
T  24164 aagttaaattagcccactcaaattggcatcagagataatcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaataccattag 24070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 162993 - 163059
Alignment:
Q  144 aaattggcgccggagataatcgaacctaagaccttgtgaagaagcacactctcaagtcctaagtcaa 210  Q
    |||||| | ||||||| |||||||||| ||||||| || || |||||||||||| ||| ||||||||    
T  162993 aaattgacaccggagagaatcgaacctcagaccttatggaggagcacactctcaggtcataagtcaa 163059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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