View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1538_low_13 (Length: 321)

Name: NF1538_low_13
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1538_low_13
NF1538_low_13
[»] chr1 (1 HSPs)
chr1 (18-315)||(49761068-49761366)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 49761068 - 49761366
Alignment:
Q  18 cattctttcttacctcatcttctaggatatttcccaagagagaatctgccacaaacccaaggaattaagtgtttacgattattttaagaataagcacatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49761068 cattctttcttacctcatcttctaggatatttcccaagagagaatctgccacaaacccaaggaattaagtgtttacggttattttaagaataagcacatc 49761167  T
Q  118 gcaatcgcatacataatttttaagtagtttatctccggtggaaaa-ggtatgtgtaatctggagttcagtcgtgatgtaaatagagtttcgtcaagaatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||||| ||||    
T  49761168 gcaatcgcatacataatttttaagtagtttatctccggtggaaaatggtctgtgtaatttggagttcagtcgtgatgtacacagagtttcgtcaaaaatt 49761267  T
Q  217 gtttcacataaaaattgaacttaagttcttttgaacagtttgttctttggtgaaattcgttaacaattagttcattttttatgtaaactgagtattatc 315  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  49761268 gtttcacacaaaaattgaacttaagttcttttgaacagtttgttctttggtgaagttcgttaacaattggttcatttttgatgtaaactgagtattatc 49761366  T

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