View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1538_low_15 (Length: 311)

Name: NF1538_low_15
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1538_low_15
NF1538_low_15
[»] chr3 (2 HSPs)
chr3 (35-299)||(17682304-17682572)
chr3 (14-299)||(19766557-19766823)
[»] chr6 (4 HSPs)
chr6 (119-266)||(15434073-15434219)
chr6 (27-108)||(15434298-15434379)
chr6 (111-180)||(10093072-10093141)
chr6 (111-180)||(33044884-33044953)
[»] chr4 (4 HSPs)
chr4 (111-280)||(22292033-22292201)
chr4 (35-108)||(22292289-22292362)
chr4 (125-180)||(29862802-29862857)
chr4 (80-112)||(7135469-7135501)
[»] scaffold0045 (1 HSPs)
scaffold0045 (111-180)||(11072-11141)
[»] chr8 (3 HSPs)
chr8 (111-180)||(5658370-5658439)
chr8 (111-180)||(14677460-14677529)
chr8 (111-180)||(31100310-31100379)
[»] scaffold0035 (1 HSPs)
scaffold0035 (112-180)||(35676-35744)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 299
Target Start/End: Original strand, 17682304 - 17682572
Alignment:
Q  35 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccct 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17682304 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccct 17682403  T
Q  135 ttctatgaaatgaattgtgttttgagtttaatcactatccacctctca----gttgtttcttcaattccattcattattgttaataaatttgcaattagg 230  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17682404 ttctatgaattgaattgtgttttgagattaatcactctccacctctcaatatattgtttcttcaattccattcattattggtaataaatttgcaattagg 17682503  T
Q  231 ttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 299  Q
    ||||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17682504 ttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctca 17682572  T

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Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 19766557 - 19766823
Alignment:
Q  14 caaaaacatgccactccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctc 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  19766557 caaaaacatgccaccccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctc 19766656  T
Q  114 tcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaat--cactatccacctctcagttgtttcttcaattccattcattattgt 211  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||           
T  19766657 tcaaggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcacactctccacctctcagttgtttcttcaattccattca------- 19766749  T
Q  212 taataaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 299  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766750 --------------ttaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 19766823  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 15434219 - 15434073
Alignment:
Q  119 gtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattgttaataaa 218  Q
    ||||||||||||||||||||| | | ||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| | ||  ||||    
T  15434219 gtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaat-tttgtaaa 15434121  T
Q  219 tttgcaattaggttcacaacataatcagatttaggtctctgacgagaa 266  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  15434120 tttgcaattagattcacaacagaatcagatttgggtctctgatgagaa 15434073  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 15434379 - 15434298
Alignment:
Q  27 ctccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 108  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434379 ctccgaaaaaagagaaataagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 10093141  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct 33044884  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 22292201 - 22292033
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattg 210  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |     
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaat- 22292103  T
Q  211 ttaataaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttg 280  Q
    ||  ||||||||||||||| ||||||||| ||||| |||| || |||||| ||||| | ||| |||||||    
T  22292102 tttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttg 22292033  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 22292362 - 22292289
Alignment:
Q  35 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 108  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292362 aaagagaaataagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
Q  125 gcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  29862857 gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct 29862802  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  80 ccgtcgttgctctctcccttcatcaacaatgct 112  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

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Target: scaffold0045 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 11072  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 5658439  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct 14677460  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
Q  111 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    |||||| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct 31100310  T

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Target: scaffold0035 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 35676 - 35744
Alignment:
Q  112 tctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 180  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct 35744  T

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