View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_18 (Length: 283)
Name: NF1538_low_18
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_18 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 9069592 - 9069454
Alignment:
| Q |
145 |
tggagtatttatgaacagtacatatacggtgttgtatttgtgtgaacaaatttgtgtttgtttatcatttatattaattttaaggatccaaaaggttaca |
244 |
Q |
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| T |
9069592 |
tggagtatttatgaacagtacatatacggagttgtatttgtgtcaacaaatttgtgtttgtttatcatttatattaattttaaggatctaaaaggttaca |
9069493 |
T |
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| Q |
245 |
ttggccaccattatatggaatctgaattctctacctttc |
283 |
Q |
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| T |
9069492 |
ttggccaccattatatgggatctgaattctctacctttc |
9069454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 9069733 - 9069648
Alignment:
| Q |
4 |
gaagtagcataggatagtggagttgataacggtggacgatggccggagatcggagttgcataaaaaagggaggtggtcgtgaatga |
89 |
Q |
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| T |
9069733 |
gaagttgcataggatagtggagttgataacggtggacgatggctggagatcggagttgcagaaaaaagggaggtggtcgtgaatga |
9069648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 8446041 - 8446005
Alignment:
| Q |
178 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
214 |
Q |
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| T |
8446041 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8446005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 8454845 - 8454809
Alignment:
| Q |
178 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
214 |
Q |
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| T |
8454845 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8454809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 45716264 - 45716305
Alignment:
| Q |
173 |
gtgttgtatttgtgtgaacaaatttgtgtttgtttatcattt |
214 |
Q |
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| T |
45716264 |
gtgttgtatttgtgtcaaataatttgtgtttgtttatcattt |
45716305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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