View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_2 (Length: 499)
Name: NF1538_low_2
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 235 - 483
Target Start/End: Complemental strand, 22042561 - 22042313
Alignment:
| Q |
235 |
atgtgcacaggaattcggcgaagtgaacccaaagtttcttgaagaattcgacaatttgaaactagtttggaatctgatagatattaatggaaaaagtcac |
334 |
Q |
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| T |
22042561 |
atgtgcacaagaattcggcgaagtgaacccaaagtttcttgaagaattcgatgatttgaatccagtttggaatctcatagatgttaatggaaaaagtcac |
22042462 |
T |
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| Q |
335 |
catgtaactttcaacaattcagaaactctccctttactaactacaggatggactgccataagagatttttaccattttgaaggcattagaaaaattgtgc |
434 |
Q |
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| T |
22042461 |
catgcaactttcaacaattcagaaactctccctttactaactacaggatgaactgccataagagatttttaccattttgaaggcatcagacaaattgtgc |
22042362 |
T |
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| Q |
435 |
taaactatgttggccaaagccgattcataatgactcttggaaggacact |
483 |
Q |
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| T |
22042361 |
taaactatgttggccaaacccgattcataatgactcttggaaggacact |
22042313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 22042746 - 22042567
Alignment:
| Q |
10 |
ataactacatcatctttaactactctttccacttgaaatggctggatatcgtgatgtgcttaaaagacaagttctgggaggttttgaaactgtacatctt |
109 |
Q |
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| T |
22042746 |
ataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaaattctaggaggttttgaaactgtacatctt |
22042647 |
T |
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| Q |
110 |
ccatatcaggtattctatattttcagctttcctaactgctgattttaat-ttgttatactactctgcactgttgttaaactt |
190 |
Q |
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| T |
22042646 |
ccatatcaggtattctatattttcagctttcctaactgct--ctgcactgttgttatactactctgcactgttgttatactt |
22042567 |
T |
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