View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_23 (Length: 262)
Name: NF1538_low_23
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 42 - 258
Target Start/End: Complemental strand, 3194890 - 3194674
Alignment:
| Q |
42 |
aattgatgcatatatgtctagtagagtactgagttgtaagcagttaagaaaatagtgattaacaatttttggtgaatgagaattataaattctgaacaaa |
141 |
Q |
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| T |
3194890 |
aattgatgcatatatgtctagtagagtactaagttgtaagcagttaagaaaatagtgattaacaatttttggtgaatgagaattacaaattctgaacaaa |
3194791 |
T |
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| Q |
142 |
ccaactgatcaatatatatactatgtgcatctgagaatttgtgacaacaaaaacaaatgctcgttttaaactgcatactctactctgtttgttttaccct |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3194790 |
ccaactgatcaatatatatactatgtgcatctgagaatttgtgacaacaaaaacaaatgctcgttttaaactgcatactctactctgtttgttttaccct |
3194691 |
T |
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| Q |
242 |
ggatatctgtgctcctc |
258 |
Q |
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||||||| ||| ||||| |
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| T |
3194690 |
ggatatcagtgttcctc |
3194674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3211022 - 3210967
Alignment:
| Q |
16 |
catgattgtcatctgcacttgtactaaattgatgcatatatgtctagtagagtact |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3211022 |
catgattgtcatctgcacttgtactaaattgatgcatatatgtctagtagagtact |
3210967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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