View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_24 (Length: 261)
Name: NF1538_low_24
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 710401 - 710272
Alignment:
| Q |
1 |
catatgtaacctaatgcttaagaacaaacataaacattttgtgacaatttcaattttaaaaattagatcgaagcgatcacacatttgaatcatggttcaa |
100 |
Q |
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| T |
710401 |
catatgtcacctaatgcttaagaacaaacataaacattttgtgacaatttcaattttaaaaattagatcgaagcgatcacacatttgaatcatggttcaa |
710302 |
T |
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| Q |
101 |
ttgattcaatcacggttgatctggataacg |
130 |
Q |
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| T |
710301 |
ttgattcaatcgcagttgatctggataacg |
710272 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 710197 - 710140
Alignment:
| Q |
197 |
gttgaaccaactggaacaatcgagttaggatcctcttcatttatctccattttcttcg |
254 |
Q |
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| T |
710197 |
gttgaacaaactggaacaatcgagttaggatcctcttcatttatctccattttcttcg |
710140 |
T |
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