View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_26 (Length: 256)
Name: NF1538_low_26
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26245688 - 26245475
Alignment:
| Q |
19 |
cataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagctatcacgt |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26245688 |
cataaaagtgtaacgctgtctaccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggataatggccaatgtatgaagcatagctatcacgt |
26245589 |
T |
|
| Q |
119 |
tgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttgaagatgttcaagttgagaatttatgttaaacctat |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26245588 |
tgaatattcacagcccattcaaatctgttgatatcagcatgtccagttccaacgtatttagcttgaagatgttcaagttgcgaatttatgttaaacctat |
26245489 |
T |
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| Q |
219 |
cactcgcctgcaac |
232 |
Q |
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|||||||||||||| |
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| T |
26245488 |
cactcgcctgcaac |
26245475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 5390828 - 5391039
Alignment:
| Q |
19 |
cataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagctatcacgt |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |
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| T |
5390828 |
cataaaagtgtaacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgt |
5390927 |
T |
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| Q |
119 |
tgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttgaagatgttcaagttgagaatttatgttaaacctat |
218 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||| |
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| T |
5390928 |
tgaatattcacagcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctat |
5391027 |
T |
|
| Q |
219 |
cactcgcctgca |
230 |
Q |
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|||||||||||| |
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| T |
5391028 |
cactcgcctgca |
5391039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 5395573 - 5395784
Alignment:
| Q |
19 |
cataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagctatcacgt |
118 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |
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| T |
5395573 |
cataaaagtgtaacgctgtctaccaatagattcattttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgt |
5395672 |
T |
|
| Q |
119 |
tgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttgaagatgttcaagttgagaatttatgttaaacctat |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||| |
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| T |
5395673 |
tgaatattcacagcccattcaaatctgttgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctat |
5395772 |
T |
|
| Q |
219 |
cactcgcctgca |
230 |
Q |
| |
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|||||||||||| |
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| T |
5395773 |
cactcgcctgca |
5395784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 50829736 - 50829825
Alignment:
| Q |
140 |
aatctgttaatatcagcatgaccagttccaacatatttagcttgaagatgttcaagttgagaatttatgttaaacctatcactcgcctgca |
230 |
Q |
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|||||||| ||||||| ||| | |||| ||| |||||||||||| ||||| || |||| |||||| |||| ||| ||||||| |||||||| |
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| T |
50829736 |
aatctgttcatatcagaatggcaagtttcaatatatttagcttggagatgctcgagttaagaattgatgtaaaaactatcac-cgcctgca |
50829825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 50846117 - 50846028
Alignment:
| Q |
140 |
aatctgttaatatcagcatgaccagttccaacatatttagcttgaagatgttcaagttgagaatttatgttaaacctatcactcgcctgca |
230 |
Q |
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|||||||| ||||||| ||| | |||| ||| |||||||||||| ||||| || |||| |||||| |||| ||| ||||||| |||||||| |
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| T |
50846117 |
aatctgttcatatcagaatggcaagtttcaatatatttagcttggagatgctcgagttaagaattgatgtaaaaactatcac-cgcctgca |
50846028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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