View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_28 (Length: 254)
Name: NF1538_low_28
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 22042876 - 22042677
Alignment:
| Q |
53 |
atgcttattcctctgtcattcctgctccaacttttattccatctcacatatgcaacttgggttttctctccatatat--ctttctatataaaccatatat |
150 |
Q |
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| T |
22042876 |
atgcttattcctctgccattcctgctccaacttttattccatctcacatatgcaacttggcttttctctccatatatatctttatatataacccatctct |
22042777 |
T |
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| Q |
151 |
tgacataattgaatgttcacaataaaaaatataactacatcatctttcacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaa |
250 |
Q |
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| T |
22042776 |
tgacattattgcatcttcacaataaaaaatataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaa |
22042677 |
T |
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