View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_29 (Length: 250)
Name: NF1538_low_29
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_29 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 82119 - 81874
Alignment:
| Q |
5 |
gactgagatgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagaca |
104 |
Q |
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| T |
82119 |
gactgatatgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagaca |
82020 |
T |
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| Q |
105 |
agaagctctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttgg |
204 |
Q |
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| T |
82019 |
agaagctctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttgg |
81920 |
T |
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| Q |
205 |
tgtgtaattggttttacttataaaattattagaatttattattttt |
250 |
Q |
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| T |
81919 |
tgtgtatttggttttacttataaaattattagaatttattattttt |
81874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 40884165 - 40884410
Alignment:
| Q |
5 |
gactgagatgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagaca |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884165 |
gactgatatgaataaagagagtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagaca |
40884264 |
T |
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| Q |
105 |
agaagctctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884265 |
agaagctctctatgtactactcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttgg |
40884364 |
T |
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| Q |
205 |
tgtgtaattggttttacttataaaattattagaatttattattttt |
250 |
Q |
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| T |
40884365 |
tgtgtatttggttttacttataaaattattagaatttattattttt |
40884410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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