View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_3 (Length: 466)
Name: NF1538_low_3
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_3 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 154 - 461
Target Start/End: Complemental strand, 13960620 - 13960313
Alignment:
| Q |
154 |
gtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcggatttggttcttccatcggcagctacgaaacattgttgttcttctaatgg |
253 |
Q |
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| T |
13960620 |
gtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcagatttggttcttccatcggcagctacgaaacattgttgttcttctaatgg |
13960521 |
T |
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| Q |
254 |
ttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgt |
353 |
Q |
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| T |
13960520 |
ttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgt |
13960421 |
T |
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| Q |
354 |
tgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgtttct |
453 |
Q |
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| T |
13960420 |
tgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgtttct |
13960321 |
T |
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| Q |
454 |
ctgctcct |
461 |
Q |
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| T |
13960320 |
ctggtcct |
13960313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 13960756 - 13960655
Alignment:
| Q |
18 |
cttcctaggtaagctattttggggtctatctttgctacttctggttcacctgtttaaaaatcggagaaaagaaaaattattattaataacagtgacatta |
117 |
Q |
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| T |
13960756 |
cttcctaggtaagctattttggggtctatctttgctacttctggttcacctgtttaaaaatcggagaaaagaaaaattattattaataacagtgacatta |
13960657 |
T |
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| Q |
118 |
aa |
119 |
Q |
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| T |
13960656 |
aa |
13960655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 264 - 447
Target Start/End: Complemental strand, 13967674 - 13967491
Alignment:
| Q |
264 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
363 |
Q |
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| T |
13967674 |
attagtttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattgga |
13967575 |
T |
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| Q |
364 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgat |
447 |
Q |
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| T |
13967574 |
cgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 251 - 448
Target Start/End: Original strand, 49870992 - 49871189
Alignment:
| Q |
251 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
350 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
49871091 |
T |
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| Q |
351 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
448 |
Q |
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| T |
49871092 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
49871189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 49865135 - 49865249
Alignment:
| Q |
331 |
tgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcg |
430 |
Q |
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| T |
49865135 |
tgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacg |
49865234 |
T |
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| Q |
431 |
gagtgcaactgcttg |
445 |
Q |
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| T |
49865235 |
gagggccactgcttg |
49865249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 6875 - 6835
Alignment:
| Q |
312 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
352 |
Q |
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| T |
6875 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
6835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 44067730 - 44067770
Alignment:
| Q |
312 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
352 |
Q |
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| T |
44067730 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44067770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 44087574 - 44087534
Alignment:
| Q |
312 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
352 |
Q |
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| T |
44087574 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44087534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 44093036 - 44093076
Alignment:
| Q |
312 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
352 |
Q |
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| T |
44093036 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44093076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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