View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_36 (Length: 224)
Name: NF1538_low_36
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 56232111 - 56231921
Alignment:
| Q |
19 |
gattcctgttatgtgataataacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagaccaactatacaaat |
118 |
Q |
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| T |
56232111 |
gattcctgttatgtgataataacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagaccaactatacaaat |
56232012 |
T |
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| Q |
119 |
gaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtg |
209 |
Q |
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| T |
56232011 |
gaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtg |
56231921 |
T |
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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 39189901 - 39189712
Alignment:
| Q |
19 |
gattcctgttatgtgataataacgacattgattaaaggtaaggtgttaagagaacaatgttgaaataattgaattatctatgaagacca--actatacaa |
116 |
Q |
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||||||| |||| |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||| | | ||| |
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| T |
39189901 |
gattcctattatatgataataacgacattaattaacggt-----gttaagagaacaatgttgaattaattgaattatctatgaagaaaaggagggagcaa |
39189807 |
T |
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| Q |
117 |
atgaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgctg |
212 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||| ||||||| |
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| T |
39189806 |
atgaagggatgacaaaaggag-gagcaacaaaagttacttggttgaattgatgtaggcaaagacagcaacaccatcttcataaataatatgtgctg |
39189712 |
T |
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