View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_37 (Length: 210)
Name: NF1538_low_37
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 12225578 - 12225383
Alignment:
| Q |
1 |
aggtccaattcacaataaaagcccacaaaaatatcaccaccttcactcgaattttccatttctctttctcttc---aaaaccagtgctacacaaattcat |
97 |
Q |
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| T |
12225578 |
aggtccaattcacaataaaagcccacaaaaatatcaccaccttcactcgaattttccatttctctttctcttcttcaaaaccagtgctacacaaattcat |
12225479 |
T |
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| Q |
98 |
cttcaagatctagatccaaatccatcaatggcgacaccagatcatctcttcaacctccgcaacaacttctacctcggtgcataccaagctgcaatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12225478 |
cttcaagatctagatccaaatccatcaatggcgacaccagatcatctcttcaacctccgcaacaacttctacctcggcgcataccaagctgcaatc |
12225383 |
T |
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