View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_5 (Length: 447)
Name: NF1538_low_5
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 37706722 - 37706492
Alignment:
| Q |
20 |
aaatactagtagattccatatatctgccgaaagaaatacattcaatatgtttttaagatatattttgacgtacaccatttattcaaagatccactattat |
119 |
Q |
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| T |
37706722 |
aaatactagtagattacatatatatgctgaaagaaatacat-caatatatttttaagatatattttgacgtacaccatttattcaaagatccactattat |
37706624 |
T |
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| Q |
120 |
aaaaacaatgcatgaagaaatacagtataaaaacatctgaatccaaagtggatcattgcataaagaaacaaaaagtaagagagtgaaataattatgtgta |
219 |
Q |
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| T |
37706623 |
aaaaacaatgcatgaagaaatacagtaataaaacatctgaatccaaagtggatcattgcataaagaaacaaaaagtaagagagtgaaataattatgtgta |
37706524 |
T |
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| Q |
220 |
aagaaaattatcatgagtaaatatttaattgg |
251 |
Q |
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| T |
37706523 |
aagaaaattatcatgagtaaatatttaattgg |
37706492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 37706338 - 37706294
Alignment:
| Q |
388 |
aattaaaatgcaatgcgtgatgaaatacacacacatgttacatat |
432 |
Q |
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| T |
37706338 |
aattaaaatgcaatgcgtgataaaatacacacacatattacatat |
37706294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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