View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_6 (Length: 442)
Name: NF1538_low_6
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 32761189 - 32760776
Alignment:
| Q |
9 |
acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca |
108 |
Q |
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| T |
32761189 |
acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca |
32761090 |
T |
|
| Q |
109 |
gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg |
208 |
Q |
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| T |
32761089 |
gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg |
32760990 |
T |
|
| Q |
209 |
ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt |
308 |
Q |
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| T |
32760989 |
ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt |
32760890 |
T |
|
| Q |
309 |
gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgacagttagcttcactgtatcggaatctgagatgggcgcgtcgcggttagcag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32760889 |
gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgacagttagcttcactgtatcggaatctgagatgggcgcgt---ggttagcag |
32760793 |
T |
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| Q |
409 |
accaaatgaccgtgttt |
425 |
Q |
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| T |
32760792 |
accaaatgaccgtgttt |
32760776 |
T |
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