View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_7 (Length: 408)
Name: NF1538_low_7
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 25117595 - 25117768
Alignment:
| Q |
14 |
atataactatcttatatcttattttatatattataccaacaaaacactttgttttttcatcaccctaagtttcctacctcttagtcttctccatatatca |
113 |
Q |
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| T |
25117595 |
atataactatcttatatcttatcttatatattataccaacaaaacactttgtttcttcatcaccctaagtttcctacctcttagtcttctccatatatca |
25117694 |
T |
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| Q |
114 |
tccttctcttaatccaaatgaatacca-ccttaacccttgaaagttcaaactcactcactcttaatttctagct |
186 |
Q |
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| T |
25117695 |
tccttctctcaatccaaatgaataccacccttaacccttgaaagttcaaactcactcactcttaatttctagct |
25117768 |
T |
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Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 248 - 395
Target Start/End: Original strand, 25117846 - 25117992
Alignment:
| Q |
248 |
agaagtacataatatcctaaagatgagaacgggaaattgttctttgcaacaaggcctaaccacagaagcagcaaacataataaagcaagcaataacccta |
347 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
25117846 |
agaagtacataat-tcctaaagatgagaacgggaaactgttctttgcaacaaggcctaacaacagaagctgcaaacataataaagcaagcaataacccta |
25117944 |
T |
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| Q |
348 |
gcaaagcgtcgtggccatgctcaagtaacaccacttcatgttgcaaat |
395 |
Q |
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| T |
25117945 |
gcaaagcgtcgtggccatgctcaagtaacaccacttcatgttgcaaat |
25117992 |
T |
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