View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1538_low_8 (Length: 401)
Name: NF1538_low_8
Description: NF1538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1538_low_8 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 81439 - 81653
Alignment:
| Q |
18 |
gaaagtgggaagtggttacaaaactataagtatgtaacaaattcccattatgagnnnnnnnnnnnnnnnnnnnnnngtacattcaaatgtaaaatgtttc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
81439 |
gaaagtgggaggtggttacaaaactataagtatgtaacaaattcccattatgagtttttcttcttttttaacttttgtacattcaaatgtaaaatgtttc |
81538 |
T |
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| Q |
118 |
ggtgtgttcctnnnnnnnnngtaaaatgtttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaa |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81539 |
ggtgtgttcctaaaaaaaaagtaaaatgtttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaa |
81638 |
T |
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| Q |
218 |
ggttaaagtaaaaca |
232 |
Q |
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||||||||||||||| |
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| T |
81639 |
ggttaaagtaaaaca |
81653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 81721 - 81810
Alignment:
| Q |
301 |
catgctttgaagtcttgatctcatggttagtatttgttagacatttgttgacaaaattgtgtttgatagaaaatactaataatttattct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81721 |
catgctttgaagtcttgatctcatggttagtatttgttagacatttgttgacaaaattgtgtttgatagaaaatactaataatttattct |
81810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 40884845 - 40884631
Alignment:
| Q |
18 |
gaaagtgggaagtggttacaaaactataagtatgtaacaaattcccattatgagnnnnnnnnnnnnnnnnnnnnnngtacattcaaatgtaaaatgtttc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40884845 |
gaaagtgggaggtggttacaaaactataagtatgtaacaaattcccattatgagtttttcttcttttttaacttttgtacattcaaatgtaaaatgtttc |
40884746 |
T |
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| Q |
118 |
ggtgtgttcctnnnnnnnnngtaaaatgtttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaa |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884745 |
ggtgtgttcctaaaaaaaaagtaaaatgtttgttgtgtgtttttagatcagtacttgtcaaaatatgattttgaataaaatttgattaacttacaatgaa |
40884646 |
T |
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| Q |
218 |
ggttaaagtaaaaca |
232 |
Q |
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||||||||||||||| |
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| T |
40884645 |
ggttaaagtaaaaca |
40884631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 40884563 - 40884474
Alignment:
| Q |
301 |
catgctttgaagtcttgatctcatggttagtatttgttagacatttgttgacaaaattgtgtttgatagaaaatactaataatttattct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884563 |
catgctttgaagtcttgatctcatggttagtatttgttagacatttgttgacaaaattgtgtttgatagaaaatactaataatttattct |
40884474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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