View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15390_high_3 (Length: 331)

Name: NF15390_high_3
Description: NF15390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15390_high_3
NF15390_high_3
[»] chr3 (3 HSPs)
chr3 (1-316)||(52647316-52647631)
chr3 (228-316)||(52647150-52647238)
chr3 (190-273)||(44350217-44350300)
[»] chr1 (2 HSPs)
chr1 (193-286)||(7346012-7346105)
chr1 (192-285)||(5231064-5231157)
[»] chr2 (2 HSPs)
chr2 (191-284)||(42988694-42988787)
chr2 (191-284)||(18585186-18585279)
[»] chr5 (1 HSPs)
chr5 (193-284)||(8140691-8140782)
[»] chr8 (2 HSPs)
chr8 (192-284)||(5452874-5452966)
chr8 (192-232)||(35259377-35259417)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 52647631 - 52647316
Alignment:
Q  1 taagaccactcaggtgttgaaatgatccaagaatcaactcaacttgaggttcaaatcaaatgcatgtatatttatgatacattattacataagcgtagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52647631 taagaccactcaggtgttgaaatgatccaagaatcaactcaacttgaggttcaaatcaaatgcatgtatatttatgatacattattacataagcgtagtg 52647532  T
Q  101 aactatatctatattatccattcaaattctcagtgaatcacctagcaaacaaaaatattgaagaatctgctcctgaaaagtatgattttcttaccatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52647531 aactatatctatattatccattcaaattctcagtgaatcacctagcaaacaaaaatattaaagaatctgctcctgaaaagtatgattttcttaccatatt 52647432  T
Q  201 catcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtactatagtttatcattaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52647431 catcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtactatagtttatcattaca 52647332  T
Q  301 gacaaaggtgaaaact 316  Q
    ||||||||||||||||    
T  52647331 gacaaaggtgaaaact 52647316  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 52647238 - 52647150
Alignment:
Q  228 ttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtactatagtttatcattacagacaaaggtgaaaact 316  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52647238 ttgtagtaatgaatggacccccagctaatcatccaaaattggttcctccatggtactatagtttatcattacggacaaaggtgaaaact 52647150  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 44350217 - 44350300
Alignment:
Q  190 cttaccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcc 273  Q
    ||||||||| ||||| |||||||||||||||||||| ||||| | |||||||||||| || ||||  || |||||||| |||||    
T  44350217 cttaccatactcatctattggagcatcatagtcataacttgtggtaatgaatggaccaccggctgtacggccaaaatttgttcc 44350300  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 7346105 - 7346012
Alignment:
Q  193 accatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtactat 286  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||| || ||||| |||||||| ||||| |||||||| |||||||||    
T  7346105 accatattcatcaattggagcatcatagtcatagcttgtagttatgaatggtcctccagccgatcgtccgaaattagttcctccgtggtactat 7346012  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 5231157 - 5231064
Alignment:
Q  192 taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta 285  Q
    |||||||||||||||| ||||||||||| ||||||||||| | ||| ||  |||| | || || ||  |||||||| |||||||||||||||||    
T  5231157 taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagttcctccatggtacta 5231064  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 42988694 - 42988787
Alignment:
Q  191 ttaccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact 284  Q
    ||||||||||||||||  || |||||||||||||||||||||| |||||| ||||| ||||||| ||  |||||||| ||||||||||| ||||    
T  42988694 ttaccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact 42988787  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 18585279 - 18585186
Alignment:
Q  191 ttaccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact 284  Q
    ||||||||||||||||  || |||||||| |||||    |||| |||| ||||||| ||||||| || ||||||||| ||||| ||||| ||||    
T  18585279 ttaccatattcatcaagaggtgcatcataatcatatgaagtagtaatgtatggaccaccagctgttcttccaaaattagttccaccatgatact 18585186  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 8140691 - 8140782
Alignment:
Q  193 accatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact 284  Q
    |||||||||||| | ||||||||||||||||||||| ||||  || || ||||| |||||||  || |||||||| ||||||||||| ||||    
T  8140691 accatattcatctagtggagcatcatagtcatagctggtagtgataaaaggacctccagctgtgcggccaaaatttgttcctccatgatact 8140782  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 5452966 - 5452874
Alignment:
Q  192 taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact 284  Q
    |||| ||||||||||  || |||||||| ||||||||||| | ||| || ||||| ||||| | || ||||||||| ||||| ||||| ||||    
T  5452966 taccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact 5452874  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 35259417 - 35259377
Alignment:
Q  192 taccatattcatcaattggagcatcatagtcatagcttgta 232  Q
    ||||||| |||||||||||||||||||| ||||| ||||||    
T  35259417 taccatactcatcaattggagcatcataatcataacttgta 35259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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