View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15390_low_1 (Length: 600)
Name: NF15390_low_1
Description: NF15390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15390_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 5233460 - 5233902
Alignment:
| Q |
18 |
actactactttacaaagccaaactattttggtgaatattgttccatgaattatagagcttgtaactgagaagattgagcactatttattgctccattttg |
117 |
Q |
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| T |
5233460 |
actactactttacaaagccaaactattttggtgaatattgttccatgaattatagagcttgtaactgagaagattgagcactatttattgctccattttg |
5233559 |
T |
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| Q |
118 |
ccataaataaatttgtttctctttacattggaatcatgtaaagaacaaattgagagggatgaaagttgcttgcaaatggcttttgaaaatttgtcttatt |
217 |
Q |
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| T |
5233560 |
ccataaataaatttgtttctctttacattggaatcatgtaaagaacaaattgagagggatgaaagttgcttgcaaatggcttttgaaaatttgtcttatt |
5233659 |
T |
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| Q |
218 |
acatcacaatcaacatatcttacataaatgttgtgactttgttaatcaagattcaatgaatgnnnnnnnnntcaatga--acacaattgcaaaagctcac |
315 |
Q |
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| T |
5233660 |
acatcacaatcaacaaatcttacataaatgttgtgactttgttaatcaagattcaatgaatg-aaaaaaaatcaatgaacacacaattgcaaaagctcac |
5233758 |
T |
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| Q |
316 |
agaaacaattgagtaaaatcataatcgataatgcaagaaaaaatggaagaaacttcaaagggagaaagagaggaaatgcgagagattgttaatggagttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5233759 |
agaaacaattgagtaaaatcataatcgataatgcaagaaaaaatggaagaaacttcaaagggagaaagagaggaaatgcgagagattgttaacggagttt |
5233858 |
T |
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| Q |
416 |
acattgctcaacatctctgggacaaaatccgactataaaatcac |
459 |
Q |
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| T |
5233859 |
acattgctcaacatctctgggacaaaatccgacaataaaatcac |
5233902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 460 - 587
Target Start/End: Original strand, 5233879 - 5234009
Alignment:
| Q |
460 |
gacaaaatccgacaataaaatcactatga---atatgagagttacaccttaaatttcatgtatgattcaactatgaaatcataaaagttctctcacggcc |
556 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
5233879 |
gacaaaatccgacaataaaatcactatgatgaatatgagagttacaccttaaatttcaagtatgattcaactatgaaatcataaaagttctctcacaaca |
5233978 |
T |
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| Q |
557 |
gtttcccttattctttacttctcctatgctt |
587 |
Q |
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| T |
5233979 |
gtttcccttattctttacttctccaatgctt |
5234009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 17129837 - 17129903
Alignment:
| Q |
122 |
aaataaatttgtttctctttacattggaatcatgtaaagaacaaattgagagggatgaaagttgctt |
188 |
Q |
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|||||||||||||| | ||||||| ||| | |||||||||||||||||| || ||| |||||||||| |
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| T |
17129837 |
aaataaatttgtttgtttttacataggagttatgtaaagaacaaattgaaagtgataaaagttgctt |
17129903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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