View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15390_low_4 (Length: 307)
Name: NF15390_low_4
Description: NF15390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15390_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 18199149 - 18198877
Alignment:
| Q |
17 |
cataggtcatggatacagacataacacagtaaaaactgaaataaatctcataatcttctggaacaagaggagaaacagaacagaagtagcatgcttctta |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
18199149 |
cataggtcatcgatacagacataacacagtaaaaactgaaataaatctca--atcttctggaaccagagtagaaacaaaacagaagtggcatgcttctta |
18199052 |
T |
|
| Q |
117 |
ttttattctaaaacattagatttcagtccaaaactcttt---catttcctttttctttttaccttgttatttatcctctctcatttacataatatgtgca |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18199051 |
ttttattctaaaacattatatttcagtccaaaactcttttttcatttcctttgtctttt--ccttgttatttatcctgtctcatttacataatatgtgca |
18198954 |
T |
|
| Q |
214 |
tcaaagatatttactcaacaaagttatctaattctgaaagatagcacctttgcagaatatgtactagactatgatct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18198953 |
tcaaagatatttactcaacaaagttatctaattctgaaagatagcacctttgcagaatatgtactagactatgatct |
18198877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 18189204 - 18189085
Alignment:
| Q |
126 |
aaaacattagatttcagtccaaaactctttcatttcctttttctttttaccttgttatttatcctctctcatttacataatatgtgcatcaaagatattt |
225 |
Q |
| |
|
|||||||| ||||||||||||||| ||| | |||||||| ||| || | ||||||||||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
18189204 |
aaaacattggatttcagtccaaaaatct--cctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
18189107 |
T |
|
| Q |
226 |
actcaacaaagttatctaattc |
247 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
18189106 |
actcaacaaagtcatctgattc |
18189085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 18231765 - 18231703
Alignment:
| Q |
174 |
accttgttatttatcctctctcatttacataatatgtgcatcaaagatatttactcaacaaag |
236 |
Q |
| |
|
||||||||||||||||| |||||| || | |||||| ||||||||||||||||||||||||| |
|
|
| T |
18231765 |
accttgttatttatcctatctcatataaaaaatatgcacatcaaagatatttactcaacaaag |
18231703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 18194369 - 18194319
Alignment:
| Q |
192 |
tctcatttacataatatgtgcatcaaagatatttactcaacaaagttatct |
242 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| |||||||| |||| |
|
|
| T |
18194369 |
tctcatttacagaatatgtacaacaaagatatttactaaacaaagtcatct |
18194319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University