View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15391_low_1 (Length: 347)
Name: NF15391_low_1
Description: NF15391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15391_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 3696869 - 3697184
Alignment:
| Q |
15 |
atgaatttgaataagaaatgttcggttgcaggttataaacaagaattggttaagaatgctgaggaattgattgaagaggaaccattgaagccatggataa |
114 |
Q |
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| T |
3696869 |
atgaatttgaataagaaatgttcggttgcaggttataaacaagaattggttaagaatgctgaggaattgattgaagaggaaccattgaagccatggataa |
3696968 |
T |
|
| Q |
115 |
ctttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagctttaagagtaggtatgtgtatgttgatgttggagctagaagcta |
214 |
Q |
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| T |
3696969 |
ctttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagctttaagagtaggtatgtgtatgttgatgttggagctagaagcta |
3697068 |
T |
|
| Q |
215 |
tggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagacttttgatgtttatgcaattgaagctgataaacattttcatcaagag |
314 |
Q |
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| T |
3697069 |
tggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagacttttgatgtttatgcaattgaagctgataaacattttcatcaagag |
3697168 |
T |
|
| Q |
315 |
tatgtgatgaaaaaag |
330 |
Q |
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| T |
3697169 |
tatgtgatgaaaaaag |
3697184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 71 - 330
Target Start/End: Complemental strand, 26046530 - 26046271
Alignment:
| Q |
71 |
tgctgaggaattgattgaagaggaaccattgaagccatggataactttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagc |
170 |
Q |
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| T |
26046530 |
tgctgagccattgattgaaaaggaaccattgaagccttggattacattgaaaagaaatttgatgaatataaagtatctttcttcaatggttgatataagt |
26046431 |
T |
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| Q |
171 |
tttaagagtaggtatgtgtatgttgatgttggagctagaagctatggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagactt |
270 |
Q |
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| T |
26046430 |
ttcaagaataggtatttatatgttgatgttggagctagaagctatggttctagtataggatcttggtttaggaaacaatatcctaagcaaaataagacat |
26046331 |
T |
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| Q |
271 |
ttgatgtttatgcaattgaagctgataaacattttcatcaagagtatgtgatgaaaaaag |
330 |
Q |
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|| |||| ||||| |||||||| ||||| ||||||||| | ||||||| | ||||||||| |
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| T |
26046330 |
ttcatgtgtatgcgattgaagccgataagcattttcataaggagtatgggttgaaaaaag |
26046271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 96 - 317
Target Start/End: Complemental strand, 26957591 - 26957370
Alignment:
| Q |
96 |
ccattgaagccatggataactttgaagaagaatgtgaagaatataaagtatgcatcttcaatggttgatataagctttaagagtaggtatgtgtatgttg |
195 |
Q |
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|||||||| |||||||| | ||||||| || ||||||| |||||||| | ||||||||||||||||||| || || || | ||||| ||||||| |
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| T |
26957591 |
ccattgaaaccatggattgcattgaagagaaacttgaagaacataaagtacttaacttcaatggttgatataagtttcaaaagcaattatgtttatgttg |
26957492 |
T |
|
| Q |
196 |
atgttggagctagaagctatggttcaagcattggaagctggtttaagaaacaatatccaaaacagaataagacttttgatgtttatgcaattgaagctga |
295 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| || |
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| T |
26957491 |
atattggagcaagaagctatggttcaagcattggaagctggttcaagaaacaatacccaaagcagaataaaacatttgaagtttatgcaattgaagcaga |
26957392 |
T |
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| Q |
296 |
taaacattttcatcaagagtat |
317 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
26957391 |
taaagcatttcatcaagagtat |
26957370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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