View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15392_low_1 (Length: 317)
Name: NF15392_low_1
Description: NF15392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15392_low_1 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 21626780 - 21626658
Alignment:
| Q |
179 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21626780 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
21626681 |
T |
|
| Q |
279 |
tctttgatgcatgcctgctactg |
301 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21626680 |
tctttgatgcatgcctgctactg |
21626658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 21626938 - 21626812
Alignment:
| Q |
22 |
tatgtattgtccctgttaactgagctaatctgaattgtaccagaactttacagtaaaaacataacaacaacgagtgtacaactttaaatt-aattaagtg |
120 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21626938 |
tatgtattgtccctattaactgagttaatctgaattgtaccagaatttcacagtaaaaacataacaacaacgagtgtacaactttaaattaaattaagtg |
21626839 |
T |
|
| Q |
121 |
atccttgatttagtgttgccaataact |
147 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21626838 |
atccttgatttagtgttgccaataact |
21626812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 28270720 - 28270789
Alignment:
| Q |
230 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctac |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
28270720 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctac |
28270789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 77801 - 77741
Alignment:
| Q |
230 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat |
77741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 40888483 - 40888543
Alignment:
| Q |
230 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat |
40888543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 14904788 - 14904728
Alignment:
| Q |
230 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
290 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||||| || |||| |||||| |
|
|
| T |
14904788 |
aacctggtaaggcaataaaagcatcggaatgcctagccgtctcagcattccttttatgcat |
14904728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 40464572 - 40464646
Alignment:
| Q |
227 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactg |
301 |
Q |
| |
|
||||||||||||| || ||||| |||||||||| ||| ||| |||||||| |||||||||||| | ||||||| |
|
|
| T |
40464572 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactg |
40464646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University