View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15392_low_4 (Length: 261)
Name: NF15392_low_4
Description: NF15392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15392_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 24370082 - 24369920
Alignment:
| Q |
1 |
ttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaacc-aacctcgaact |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
24370082 |
ttagtagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaaccaaaccttgaact |
24369983 |
T |
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| Q |
100 |
ttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat |
162 |
Q |
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| T |
24369982 |
ttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagccat |
24369920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 24358664 - 24358564
Alignment:
| Q |
63 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
161 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
24358664 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca |
24358565 |
T |
|
| Q |
162 |
t |
162 |
Q |
| |
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| T |
24358564 |
t |
24358564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 24364627 - 24364727
Alignment:
| Q |
63 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
161 |
Q |
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| T |
24364627 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca |
24364726 |
T |
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| Q |
162 |
t |
162 |
Q |
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| T |
24364727 |
t |
24364727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 24354974 - 24354902
Alignment:
| Q |
90 |
acctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat |
162 |
Q |
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| T |
24354974 |
acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccat |
24354902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24358764 - 24358699
Alignment:
| Q |
1 |
ttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaa |
66 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||| |
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| T |
24358764 |
ttagtagtcttctcatcatcacctgcatatatgcgtgcaatgtaaatcaaagaagaaactcttgaa |
24358699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24364497 - 24364541
Alignment:
| Q |
1 |
ttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaa |
45 |
Q |
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|||| ||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
24364497 |
ttagtagtcttctcatgatctcctgcatatatgtgtgcaatgtaa |
24364541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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