View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_16 (Length: 356)
Name: NF15393_high_16
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_16 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 12626 - 12831
Alignment:
| Q |
49 |
aatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagttatactattt |
148 |
Q |
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| T |
12626 |
aatttcttattcaattcgttctttctaaatttgatgttgattttgattgacaatttcgttggcaatgtgaccgacgattccatcattagttatactattt |
12725 |
T |
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| Q |
149 |
gaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggc |
248 |
Q |
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| T |
12726 |
gaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggc |
12825 |
T |
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| Q |
249 |
agtgag |
254 |
Q |
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|||||| |
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| T |
12826 |
agtgag |
12831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 10452784 - 10452995
Alignment:
| Q |
49 |
aatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagttatactattt |
148 |
Q |
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| T |
10452784 |
aatttcttattcaattcgttctttctaaatttgatatcgattttgattgacaatttcgttggcaatttgactaacgattccatcattagttatactattt |
10452883 |
T |
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| Q |
149 |
gaa------tttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagc |
242 |
Q |
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| T |
10452884 |
gaattttattttgattttggatttttattcatttctactttaggttttagattgcatcatgtgccatgttacaatggatgggaggatcaaggcttaaagc |
10452983 |
T |
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| Q |
243 |
tacggcagtgag |
254 |
Q |
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|||| ||||||| |
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| T |
10452984 |
tacgacagtgag |
10452995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 12604306 - 12604113
Alignment:
| Q |
49 |
aatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagttatactattt |
148 |
Q |
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| T |
12604306 |
aatttcttattcaattcgttctttctaaatt------------tgattgacaatttcgttggcaatttgaccgaccattccatcattagttatactattt |
12604219 |
T |
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| Q |
149 |
gaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggc |
248 |
Q |
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| T |
12604218 |
gaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggc |
12604119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 23261413 - 23261554
Alignment:
| Q |
67 |
ttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcatta--gttatactatttgaa------tttgatt |
158 |
Q |
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|||||||||||||||| || |||||||||| | ||||| || |||||||||| ||| ||||||| ||| |||||||||| || ||||||| |
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| T |
23261413 |
ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccatagttaattttatactattccaattcaattttgatt |
23261512 |
T |
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| Q |
159 |
ttggattttgattcatttctactttaggttttagattgcatc |
200 |
Q |
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| | ||||||||||||| |||||||| |||||||||||||| |
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| T |
23261513 |
tcagcttttgattcatttatactttagattttagattgcatc |
23261554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 56478534 - 56478393
Alignment:
| Q |
67 |
ttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcattagtt--atactatttgaatttgattttg--- |
161 |
Q |
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| T |
56478534 |
ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccatagttaattttatactattccaattcaattttgatt |
56478435 |
T |
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| Q |
162 |
---gattttgattcatttctactttaggttttagattgcatc |
200 |
Q |
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| T |
56478434 |
tcagcttttgattcatttatactttagtttttagattgcatc |
56478393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 6898231 - 6898166
Alignment:
| Q |
164 |
ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggat |
229 |
Q |
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|||||||| |||||||| || |||||||| | |||||||| ||||||||||| ||||||||||| |
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| T |
6898231 |
ttttgatttgtttctactataagttttagaatccatcatgtagcatgttgcaattgatgggaggat |
6898166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 33619317 - 33619228
Alignment:
| Q |
164 |
ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag |
254 |
Q |
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|||||||| |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| || |||||||| |
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| T |
33619317 |
ttttgatttgtttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag |
33619228 |
T |
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