View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_17 (Length: 340)
Name: NF15393_high_17
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 24517574 - 24517882
Alignment:
| Q |
20 |
aaaccaccaatggatgaaagggcgatacccagcaagaattgagaatccatgaggatgagaatgcaagggaaaaatcgaaatgaatttgattattgaacta |
119 |
Q |
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| T |
24517574 |
aaaccaccaatggatgaaagggcgatacccagcaagaattgagaatccatgaggatgagaatgcaagggaaaaatcgaaatgaatttgattatggaacta |
24517673 |
T |
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| Q |
120 |
tgcttggatccatcattcacaacatgtgnnnnnnnnnnnnnncagtttttcattcacggttattattattttaatgtaagaccacgatgggaggaaaggt |
219 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24517674 |
tgcttggatccatcattcacaacatgtgtgtatatatatatacagtttttcattcacggttattattattttaatgtaagaccacgatgggaggaaaggt |
24517773 |
T |
|
| Q |
220 |
tagggaatttgaatatcccacagtgaaacatggatacattaaagaaagagatgaattgtgtcattggtccacgaaaagaacttttttctccactttctcg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24517774 |
tagggaatttgaatatcccacagtgaaacatggatacattaaagaaagagatgaattgtgtcattggtccacgaaaagaacttttttctccactttctcg |
24517873 |
T |
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| Q |
320 |
tgtcacctt |
328 |
Q |
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||||||||| |
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| T |
24517874 |
tgtcacctt |
24517882 |
T |
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