View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_high_18 (Length: 328)

Name: NF15393_high_18
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_high_18
NF15393_high_18
[»] chr4 (1 HSPs)
chr4 (18-306)||(54237780-54238068)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 54237780 - 54238068
Alignment:
Q  18 tatactatagaactggaaatgtttctttcatattgatcgttgcttttgcttttgcattgcatcaatgatcaatgcatgcatgtactgggccggtaaagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54237780 tatactatagaactggaaatgtttctttcatattgatcgttgcttttgcttttgcattgcatcaatgatcaatgcatgcatgtactgggccggtaaagag 54237879  T
Q  118 ctgggctagttattcatgggcctacctccatttaacttcgactcctactcgttacttgtttctgatttcaaactaatggttcggattataaaatttgaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54237880 ctgggctagttattcatgggcctacctccatttaacttcgactcctactcgttacttgtttctgatttcaaactaatggttcggattataaaatctgaaa 54237979  T
Q  218 agttttagactattatttagaaggtgtttttaatgtgcttttacacaatgaattctataatcttaatctgaaatgttgtaaggcgaacg 306  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54237980 agttttagagtattatttagaaggtgtttttaatgtgcttttacacaatgaattctataatcttaatcttaaatgttgtaaggcgaacg 54238068  T

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