View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15393_high_19 (Length: 312)
Name: NF15393_high_19
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_19 |
 | |
|
| [»] scaffold0238 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0238 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 13185 - 12999
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13185 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatat |
13086 |
T |
|
| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13085 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
12999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 12931 - 12874
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaagaattaagagaatcaacttcaaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12931 |
tagtgattgacatgaacagaaaagtgcacacaaaaaattaagagaatcaacttcaaga |
12874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 10453349 - 10453163
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10453349 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagctgaagaagatat |
10453250 |
T |
|
| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10453249 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaactgagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
10453163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 10453093 - 10453036
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaagaattaagagaatcaacttcaaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10453093 |
tagtgattgacatgaacagaaaagtgcacacaaaaaattaagagaatcaacttcaaga |
10453036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 12603755 - 12603941
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12603755 |
ggagataagtgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatat |
12603854 |
T |
|
| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12603855 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagagg |
12603941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 23261881 - 23261698
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaag |
96 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
23261881 |
ggagataaatgaccgttttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaag |
23261783 |
T |
|
| Q |
97 |
atatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
181 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
23261782 |
atatgtgggaaaattatttacttataaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
23261698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 12604011 - 12604068
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaagaattaagagaatcaacttcaaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12604011 |
tagtgattgacatgaacagaaaagtgcacacaaaaaattaagagaatcaacttcaaga |
12604068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 23261638 - 23261587
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaagaattaagagaatcaact |
306 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
23261638 |
tagtgattgacatgaacagagaagggcacacaaaaaattatgagaatcaact |
23261587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 56478066 - 56478249
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaag |
96 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
56478066 |
ggagataaatgaccgtattaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaag |
56478164 |
T |
|
| Q |
97 |
atatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
181 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
56478165 |
atatgtgggaaaataatttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
56478249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 56478309 - 56478360
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaagaattaagagaatcaact |
306 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
56478309 |
tagtgattgacatgaacagagaagggcacacaaaaaattatgagaatcaact |
56478360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University