View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_2 (Length: 759)
Name: NF15393_high_2
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 98 - 658
Target Start/End: Complemental strand, 28258984 - 28258423
Alignment:
| Q |
98 |
gcatgttcttctcagttgtttgatattgttagatgtttttgaaactcatccctttcgttattagtatttgtttgccttggaccttcgattgcaaaatcgc |
197 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
28258984 |
gcatgttcttctcagttgtttgatattgttatatgtttttgaaactcacccctttcgttatttttatttgtttgccttggaccttcaattgcaaaatcgc |
28258885 |
T |
|
| Q |
198 |
tgttattt--caggttatctcttnnnnnnnttattttatgttcctcttttgttattaagacattgtttgctctagtaggtgacatcgggttgtaatgaat |
295 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28258884 |
tgttttttttcaggttatctcttaaaaaaattattttatgttcctcttttgttattaagacattgtttgctctagtaggtgacatcgggttgtaatgaat |
28258785 |
T |
|
| Q |
296 |
gtattgtagtttacatgtgtacctataaatatgccaaaatttattataatgaaatttgaaatcttcaatcgaagattatgtaaatgggccatgatatcat |
395 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28258784 |
gtattgtagtttacatgtgtacctataaataagccaaaatttattataatgaaatttgaaatcttcaatcgaagattatgtaaatgggccgtgatatcat |
28258685 |
T |
|
| Q |
396 |
ttaccttttgnnnnnnnnttagactcgtatttatatcctcgttatgatatcttacttatatataaaccttaaatatgttatttagggtttgaggtgtcac |
495 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28258684 |
ttaccttttgaaaaataattagactcgtatttatatcctcgttatgctatcttacttatatataaaccttaaatatgttatttagggtttgaggtgtcac |
28258585 |
T |
|
| Q |
496 |
atgtgttgcttctgaatctcatagttcatggttgctctcatgatacaactaaattctagagcgtcgtcaacatgcttcttataagcatgtcttgcatcct |
595 |
Q |
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||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28258584 |
atgtgttgcttctgaatcttatagttcatagttgctagcatgatacaactaaattctagagcatcgtcaacatgcttcttataagcatgtcttgcatcct |
28258485 |
T |
|
| Q |
596 |
ttaaagtagaagtggatggttcctcatcaggaactggcccatcaagaacatacagtttcttct |
658 |
Q |
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|||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28258484 |
ttaaagta-tagtgggtggttccacatcaggaactggcccatcaagaacatacagtttcttct |
28258423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 457 - 658
Target Start/End: Complemental strand, 28274216 - 28274011
Alignment:
| Q |
457 |
ataaaccttaaatatgttatttagggtttgaggtgtcacatgtgttgcttctgaatctcatagttcatggttgctctcatgatacaactaaattctagag |
556 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
28274216 |
ataaactttaaatatgttatttagggtttgaggcgtcacatgtgttgcttctgaatctcatagttcatggttgctagcatgatgcaacaaaattctagag |
28274117 |
T |
|
| Q |
557 |
cgtcgtcaacatgcttcttataagcatgtcttgcatcctttaaagtagaagtggatggttcctcatcaggaactggcccatca----agaacatacagtt |
652 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||| ||| |||| | ||||||||||||| |
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| T |
28274116 |
cgtcgtcaacatgcttcttataagcatctcttgcatcctttaaagtagaagtgggtagttcctcttcaggagttggtccattaagatagaacatacagtt |
28274017 |
T |
|
| Q |
653 |
tcttct |
658 |
Q |
| |
|
|||||| |
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|
| T |
28274016 |
tcttct |
28274011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 28275315 - 28275238
Alignment:
| Q |
328 |
gccaaaatttattataatgaaatttgaaatcttcaatcgaagattatgtaaatgggccatgatatcatttaccttttg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |
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| T |
28275315 |
gccaaaatttattataatgaaatttgaaatcttcaatcgaagattatgtaaatgggtcgtgatatcctttaccttttg |
28275238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 28277163 - 28277056
Alignment:
| Q |
101 |
tgttcttctcagttgtttgatattgttagatgtttttgaaactcatccctttcgttattagtatttgtttgccttggaccttcgattgcaaaatcgctgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |||| ||| |||||| |||||| || |||||||||||||||||| || ||||||||| | ||| |
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| T |
28277163 |
tgttcttctcagttgtttgatattgttatatgttttcgaaattca-cccttttgttatttgtgtttgtttgccttggacctccgtttgcaaaattgttgt |
28277065 |
T |
|
| Q |
201 |
tatttcagg |
209 |
Q |
| |
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||||||||| |
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| T |
28277064 |
tatttcagg |
28277056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 28277005 - 28276910
Alignment:
| Q |
231 |
ttatgttcctcttttgttattaagacattgtttgctctagtaggtgacatcgggttgtaatgaatgtattgtagtttacatgtgtacctataaata |
326 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || || |||||||||||| ||| ||| |||||||||||| ||||| ||||| ||||||||| |
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| T |
28277005 |
ttatgttcctcttttgttattaagacatcgttttctttaataggtgacatcgagttttaacgaatgtattgtattttacgcgtgtatctataaata |
28276910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 661 - 742
Target Start/End: Complemental strand, 55498951 - 55498870
Alignment:
| Q |
661 |
ggtggcatttaacatggaccaatgtaaaacttgcccatgatggaccacttatgattattggttagatttttgtggtctatta |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55498951 |
ggtggcatttaacatggaccaatgtaaaacttgcccatgatggaccacttatgattattggttagattttagtggtctatta |
55498870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 12374140 - 12374087
Alignment:
| Q |
328 |
gccaaaatttattataatgaaatttgaaatcttcaatcgaagattatgtaaatg |
381 |
Q |
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||||||||||||||||||||| |||||||| || ||| || ||||||||||||| |
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|
| T |
12374140 |
gccaaaatttattataatgaagtttgaaatattaaattgaggattatgtaaatg |
12374087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 728
Target Start/End: Original strand, 55498157 - 55498190
Alignment:
| Q |
695 |
ccatgatggaccacttatgattattggttagatt |
728 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
55498157 |
ccatgatggatcacttatgattattggttagatt |
55498190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 660 - 742
Target Start/End: Original strand, 3594494 - 3594576
Alignment:
| Q |
660 |
aggtggcatttaacatggaccaatgtaaaacttgcccatgatggaccacttatgattattggttagatttttgtggtctatta |
742 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
3594494 |
aggtggcatttaaaatggaccaatgtaaaacttgcccatgatggaccatttatgattattggttagattttagtggtttatta |
3594576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 3595311 - 3595251
Alignment:
| Q |
668 |
tttaacatggaccaatgtaaaacttgcccatgatggaccacttatgattattggttagatt |
728 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3595311 |
tttaacatggatcaatgtaaaacttgtccatgatggaccacttatgattattggttagatt |
3595251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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