View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_20 (Length: 282)
Name: NF15393_high_20
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40051999 - 40051761
Alignment:
| Q |
1 |
ctgttcctgaagtagtggaacccgatcatgttatggaggaatctgatagattctttaagagttcattctttaggaaaattgcacatgttcaggaacgtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051999 |
ctgttcctgaagtagtggaacccgatcatgttatggaggaatctgatagattctttaagagttcattctttaggaaaattgcacatgttcaggaacgtag |
40051900 |
T |
|
| Q |
101 |
ttatcctgatcataaccaagtttctagtccgattcacagagatgcttttgcttatcaacctcgtgctgagactcttaagtctgttggtgttgatccatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051899 |
ttatcctgatcataaccaagtttctagtccgattcacagagatgcttttgcttatcaacctcgtgctgagactcttaagtctgttggtgttgatccatct |
40051800 |
T |
|
| Q |
201 |
catgtgtgacgactgtcactctgattaattactcaaggttct |
242 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||| |
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| T |
40051799 |
catgtgt---gactgtcactcttattaattactcaaggttct |
40051761 |
T |
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