View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_28 (Length: 228)
Name: NF15393_high_28
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 26072663 - 26072492
Alignment:
| Q |
13 |
agatgaagatgatagcctaaaattatttacagtaaattaaatcacaaatagataagattattaaagttattaaatcaaccttttttacatataaagaact |
112 |
Q |
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| T |
26072663 |
agatggagatgatagcctaaaattatttacagtaaattaaatcacaaatagataagattattaaa---------tcaaccttttttacatataaagaact |
26072573 |
T |
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| Q |
113 |
tatttaaattaacgtttttaaaatgtttcttctaaacatatatactgatgatagtctaatatcaatttaagtaatatcttt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26072572 |
tatttaaattaacgtttttaaaatgtttcttctaaacatatatactgctgatagtctaatatcaatttaagtaatatcttt |
26072492 |
T |
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