View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15393_high_6 (Length: 540)
Name: NF15393_high_6
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 523
Target Start/End: Original strand, 41276822 - 41277340
Alignment:
| Q |
9 |
gaagaaaatgtgttatgttttttgcattggattcaggaacagtaagtgaaccactaccgaggaaagtgtgtttagcatttttaatggttaggctgacatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41276822 |
gaagaaaatgtgttatgttttttgcattggattcaggaacagtaagtgaaccactaccgaggaaagtgtgtttagcatttttaatggttaggctgacatg |
41276921 |
T |
|
| Q |
109 |
ctcctcaagtgtgtttagaccatgtttaaggtcttggtcaagaatgttgattgggaatgatttgtagcaacttaaagccaattccattcctattagattg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41276922 |
ctcctcaagtgtgtttagaccatgtttaaggtcttggtcaagaatgttgattgggaatgatttgtagcaacttaaagccaattccattcctattagattg |
41277021 |
T |
|
| Q |
209 |
gtatctacctcttgaagtttctctcccaatttattgtaatgtggtttgaaaaaattaattggaagcctctcccacttcatgccatcctatt-caaaaaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41277022 |
gtatctacctcttgaagtttctctcccaatttattgtaatgtggtttgaaaaaattaattggaagcctctcccacttcatgccatcctattaaaaaaaat |
41277121 |
T |
|
| Q |
308 |
gaaaacaattattagacaggtaatataaaggaaacacttaatacatgatatggaatttgaatttcctactgtcacaaagtgcacgcattc---aacgcat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
41277122 |
gaaaacaattattagacaggtaatataaaggaaacacttaatacatgatatggaatttgaatttccgacggtcaccaagtgcacgcattcaataacgcat |
41277221 |
T |
|
| Q |
405 |
tgacaatcgttcggccgagatcaaatatatgaatttcaagttcagtattttaaattgaggtatggatcgccatattttgatctaacggccatcaatatac |
504 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41277222 |
tgacaatcgttccgccgagatcaaatatatgaatttcaagttcagtattttaaattgaggtatggatcgccatattttgatctaaaggccatcaatatac |
41277321 |
T |
|
| Q |
505 |
cgattgtgtgaaatgagtg |
523 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41277322 |
cgattgtgtgaaatgagtg |
41277340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University