View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_high_8 (Length: 515)
Name: NF15393_high_8
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 11586126 - 11586416
Alignment:
| Q |
19 |
gtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgattagtgcaaacctaaggaattgtttcacttt |
118 |
Q |
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| T |
11586126 |
gtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtttttcgattagtgcaaacctaaggaattctttcacttt |
11586225 |
T |
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| Q |
119 |
gaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcggaagaaaattttatttcgattcatttatcg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
11586226 |
gaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggcatgtcagccttatagcgaaagaaaaatttatttcgattcatttatcg |
11586325 |
T |
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| Q |
219 |
aattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaagttacggatttcttggtcac |
309 |
Q |
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| T |
11586326 |
aattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacataaaaaaacacaagttacggatttcttggtcac |
11586416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 11598715 - 11599002
Alignment:
| Q |
19 |
gtacttctgtagttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgattagtgcaaacctaaggaattgtttcacttt |
118 |
Q |
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| T |
11598715 |
gtacttctgtagttagcttgttgatttacatctgagggttgatgcctttctcgtatctcggtctttcgattagtgcaaacctaagtaattgtttcacttt |
11598814 |
T |
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| Q |
119 |
gaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcggaagaaaattttatttcgattcatttatcg |
218 |
Q |
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| T |
11598815 |
gaaacctatgttaaacgttctacacaataggcttaggttttggcgtaataggtatgtcagccttatagcgaaagaaaattttatttcgattcatttatcg |
11598914 |
T |
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| Q |
219 |
aattcacagaaatttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaagttacggatttcttggtcac |
309 |
Q |
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| T |
11598915 |
aattcacagaaatttttaaaaagaaaaattgtctacatcatctgaa---gtcacgacatacaaaaacacaagttacggatttcttggtcac |
11599002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 31 - 296
Target Start/End: Original strand, 11609274 - 11609538
Alignment:
| Q |
31 |
ttagcttgttgatttacatctcagggttgatgcctttctcgtatctcggtctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgtt |
130 |
Q |
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| T |
11609274 |
ttagcttcttgatttggaactcaaggtcgatgcctttcttgtatctcgggctttcgattagtgcaaacctaaggaattgtttcactttgaaacctatgtt |
11609373 |
T |
|
| Q |
131 |
aaacgttctacacaataggcttaggttttggcgtaataggtatgttagccttatagcggaagaaaattttatttcgattcatttatcgaattcacagaaa |
230 |
Q |
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| T |
11609374 |
aaacgttgtagacaataagattaggttttggcataataggtatgtcagccttatagcggaagaaaattttattccgattcatttatcgaactgacccaaa |
11609473 |
T |
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| Q |
231 |
tttttaaaaagaaaaattgtctacatcatctgaaaatgtcacgacatacaaaaacacaagttacgg |
296 |
Q |
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|||| |||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||| |
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| T |
11609474 |
ttttcaaaaagaaaaattgtctacaccatttgaaaatgtctcgacatac-aaaacacaagttacgg |
11609538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 377 - 505
Target Start/End: Original strand, 11586484 - 11586613
Alignment:
| Q |
377 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11586484 |
catcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11586583 |
T |
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| Q |
476 |
attattcaagaatgtttcatagaccctttg |
505 |
Q |
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| T |
11586584 |
attattcaagaatgtttcatagaccctttg |
11586613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 377 - 505
Target Start/End: Original strand, 11599070 - 11599199
Alignment:
| Q |
377 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11599070 |
catcttttgatgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11599169 |
T |
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| Q |
476 |
attattcaagaatgtttcatagaccctttg |
505 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11599170 |
attattcaagaatgtttcatagaccctttg |
11599199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 377 - 505
Target Start/End: Original strand, 11609569 - 11609698
Alignment:
| Q |
377 |
catcttttgatgtgtaaattgtttaggtcttttggtattaannnnnnnn-ctttctatgtggagcagcctctagtttcaccttccaaagatggtgtgaag |
475 |
Q |
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||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11609569 |
catcttttgctgtgtaaattgtttaggtcttttggtattcatttttttttctttctatgtggagcagcctctagtttcacctcccaaagatggtgtgaag |
11609668 |
T |
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| Q |
476 |
attattcaagaatgtttcatagaccctttg |
505 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11609669 |
attattcaagaatgtttcatagaccctttg |
11609698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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