View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_11 (Length: 517)
Name: NF15393_low_11
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 10174438 - 10174152
Alignment:
| Q |
13 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
112 |
Q |
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| T |
10174438 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgtgtatga |
10174339 |
T |
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| Q |
113 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
212 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10174338 |
cccgaaagctaccaccttctttgtctcatttggatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
10174239 |
T |
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| Q |
213 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagcaactatgcttgcacatgaggt |
299 |
Q |
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| T |
10174238 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagcaactatgcttgcacatgaggt |
10174152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 10174152 - 10174067
Alignment:
| Q |
416 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatgatacactgtgtgcttaatctattt |
501 |
Q |
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| T |
10174152 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttgatttctatgatagactgtgtgcttaatctattt |
10174067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 28 - 501
Target Start/End: Complemental strand, 1238776 - 1238304
Alignment:
| Q |
28 |
atgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatgacccgaaagctaccac |
127 |
Q |
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| T |
1238776 |
atgcattcagagatcaacaaattgaggtctatttctgaggatatttcacagtatggctttttgcatcgtgtttggttgcgtatgacacgaaagctaccac |
1238677 |
T |
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| Q |
128 |
cttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttgctcgggagggaagat |
227 |
Q |
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| T |
1238676 |
cttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttcgttattttcctgctttagtttgtccgggagggaagat |
1238577 |
T |
|
| Q |
228 |
tattgcatccactgctctcattgagcttcattcaagtgatgtagagttagcaactatgcttgcacatgaggtaattgataatctttctttgtataactcc |
327 |
Q |
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| T |
1238576 |
tattgcatccactgctttcattgagcttcatccaagtgatgtagagttagcaactatgcttgcacatgaggtaattgatcatcttcctttatataactcc |
1238477 |
T |
|
| Q |
328 |
ttgttgcagttgcagttgcggttgcattttgaatcttga-----ctcnnnnnnngttgttgaaaaaataatattggttttcttgttaattagattgcgca |
422 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
1238476 |
ttgttgcag------ttgcggttgcattgtgaatcttgagtttttttttttttttttgttgaaaaaataacgttggttttctcgttaattagattgcgca |
1238383 |
T |
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| Q |
423 |
tattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatgatacactgtgtgcttaatctattt |
501 |
Q |
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||||||||| |||||||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
1238382 |
tattatggcacggcatggctgtgaaaggcgtacaaaggtcgagttgatttctatgatacaccgtgtgcttaatcgattt |
1238304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 1173923 - 1174342
Alignment:
| Q |
13 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
112 |
Q |
| |
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|||||| |||| || |||||| |||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||| |
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| T |
1173923 |
aatattgttggcgccatgcattcagagatcaacaaattgaggtctatttctgatgatatttctcagtatggcttttggcaccgtgtttggttgcgtatga |
1174022 |
T |
|
| Q |
113 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
212 |
Q |
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|||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||| ||||| |||| ||||||| || | | || ||||||| |
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| T |
1174023 |
cccgaaagctaccaccttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttacttcttttccttctttagtttg |
1174122 |
T |
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| Q |
213 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagcaactatgcttgcacatgaggtaattgataatctt |
312 |
Q |
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|||| ||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
1174123 |
tccgggtgggaagattattgcatccactactttcattgagcttcatccaactgatgtagagttagcaactatgcttgcacatgaggtaattcatcatctt |
1174222 |
T |
|
| Q |
313 |
tctttgtataactccttgttgcagttgcagttgcggttgcattttgaatcttgactc-----nnnnnnngttgttgaaaaaataatattggttttcttgt |
407 |
Q |
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|||||||||| | |||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||| | |||||||| || |
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| T |
1174223 |
cttttgtataacacattgtggcagttgca------gttgcattgtgaatcttgactctttctcttttttgttgttgaaaaaataatgtcggttttctcgt |
1174316 |
T |
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| Q |
408 |
taattagattgcgcatattatggctc |
433 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
1174317 |
taattagattgcacatattatggctc |
1174342 |
T |
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