View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_13 (Length: 509)
Name: NF15393_low_13
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 14959935 - 14960438
Alignment:
| Q |
1 |
tactatattgatttggcagtcttgttaacttaattttttcccacatcagtgatgtcatgtggagtttgagtgcataaccataatgctgctttaatgcagt |
100 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14959935 |
tactatatagaattggcagtcttgttaacttacttttttcccacatcagtgatgtcatgtggagtttgagttcataaccataatgctgctttaatgcagt |
14960034 |
T |
|
| Q |
101 |
gatgtcagcctaagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaatgctaacatttattttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960035 |
gatgtcagcctaagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaatgctaacatttattttt |
14960134 |
T |
|
| Q |
201 |
cttgtggaaactacagaaatgaacaagatagaattttgcacaccataatttaannnnnnnnncatctgttactgttgttgtttgcagatacagtggttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14960135 |
cttgtggaaactacagaaatgaacaagatagaattttgcacaccataatttaatttttttttcatctgttactgttgttgtttgcagatacagtggttat |
14960234 |
T |
|
| Q |
301 |
tgtatcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattc--------atggttcccaatca |
392 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14960235 |
tgtttcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattcatggttgaatggttcccaatca |
14960334 |
T |
|
| Q |
393 |
tgagtactgcagttggctaactaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacct |
492 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960335 |
tgagtactgcagttgg----ctaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccatgaaaatgaacatgacct |
14960430 |
T |
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| Q |
493 |
ttgcttct |
500 |
Q |
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|||||||| |
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| T |
14960431 |
ttgcttct |
14960438 |
T |
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